View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385-Insertion-3 (Length: 924)

Name: NF4385-Insertion-3
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385-Insertion-3
NF4385-Insertion-3
[»] chr5 (2 HSPs)
chr5 (216-924)||(42560365-42561091)
chr5 (12-217)||(42561385-42561590)
[»] chr4 (1 HSPs)
chr4 (133-178)||(47714914-47714959)


Alignment Details
Target: chr5 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 216 - 924
Target Start/End: Complemental strand, 42561091 - 42560365
Alignment:
216 taataattttgacatttgaaacttgttttcttatatagcttttgcactgatgtgtcaattcagcgttgtcaaataatgttgcactatagcatggtagaat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
42561091 taataattttgacatttgaaacttgttttcttatatagcttttgcactgatgtgtcaattcagtgttgtcaaataatgttgcactatagcatggtagaat 42560992  T
316 ttgaaacaaaacactattttccatgatctgcatttgaccattattttgtagattgtagatgtaattttatttcatgccttttcaatgttatagtctgtca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42560991 ttgaaacaaaacactattttccatgatctgcatttgaccattattttgtagattgtagatgtaattttatttcatgccttttcaatgttatagtctgtca 42560892  T
416 tccaaaatgt------------------atgtataggatggctgtctaatgtcgattactctccctctaccaaatcctagacttgttcatataactgtta 497  Q
    ||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42560891 tccaaaatgtgaaagtgaaggcttcttgatgtataggatggctgtctaatgtcgattactctccctctaccaaatcctagacttgttcatataactgtta 42560792  T
498 tagtttgatattaatattgtggcatttgagtgtgtattaaagtggccaattcactttagcttggctggagtggtggggagtaaaatcttgcttccctcaa 597  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
42560791 tagtttgatattaatattatggcatttgagtgtgtattaaagtggccaattcactttagcttggctggagtggtgaggagtaaaatcttgcttccctcaa 42560692  T
598 ttgttggggatttagaggagagtaatgatttatctgatcttatatgtggcatcatcggcccaaaaagtattcctcaataaaatgaaacacattaggacct 697  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||    
42560691 ttgttggggatttagaggagagcaatgatttatctgatcttatatgtggcatca---gcccaaaaagtattcctcaataaaatgaagcacattaggacct 42560595  T
698 aaaaagaaaattaaccattttcctttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccttccgctcgattaagcaa 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
42560594 aaaaagaaaattaaccattttcctttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccctcccctcgattaagcaa 42560495  T
798 aaaacctgattaa-ttatcatgtagatcttgacttacgccataacaattaataagg-aaaaaaggtgttatactctaaccatttgtcataagtgattgat 895  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
42560494 aaaacctgattaatttatcatgtagatcttgacttacgccataacaattaataaggaaaaaaaggtgttatactctaaccatttgtcataagtgattgat 42560395  T
896 taattg-tttgttaaaactcaccgtgagta 924  Q
    |||||| |||||||||||||||||||||||    
42560394 taattgttttgttaaaactcaccgtgagta 42560365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 42561590 - 42561385
Alignment:
12 tgataggaggaaggaagtgtgacctcttcaatannnnnnnnattatgaactagtttagccattgaattacccttaaaaatatatggagatttgtattagg 111  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42561590 tgataggaggaaggaagtgtgacctcttcaatatattttttattatgaactagtttagccattgaattacccttaaaaatatatggagatttgtattagg 42561491  T
112 ccattagtgataatggaaataagattagactctaatctaataaaaataggttgcgcatgttccattcctggaacattgcaatacaaatgcgagagcttaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
42561490 ccattagtgataatggaaataagattagactctaatctaataaaaataggttgcgcatgttccattcctggaacattgctatacaaatgcgagagcttaa 42561391  T
212 ttaata 217  Q
    ||||||    
42561390 ttaata 42561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 47714959 - 47714914
Alignment:
133 agattagactctaatctaataaaaataggttgcgcatgttccattc 178  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
47714959 agattagactctaatctaataaaaataggttgtgcatgttccattc 47714914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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