View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385-Insertion-3 (Length: 924)
Name: NF4385-Insertion-3
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 216 - 924
Target Start/End: Complemental strand, 42561091 - 42560365
Alignment:
| Q |
216 |
taataattttgacatttgaaacttgttttcttatatagcttttgcactgatgtgtcaattcagcgttgtcaaataatgttgcactatagcatggtagaat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42561091 |
taataattttgacatttgaaacttgttttcttatatagcttttgcactgatgtgtcaattcagtgttgtcaaataatgttgcactatagcatggtagaat |
42560992 |
T |
|
| Q |
316 |
ttgaaacaaaacactattttccatgatctgcatttgaccattattttgtagattgtagatgtaattttatttcatgccttttcaatgttatagtctgtca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560991 |
ttgaaacaaaacactattttccatgatctgcatttgaccattattttgtagattgtagatgtaattttatttcatgccttttcaatgttatagtctgtca |
42560892 |
T |
|
| Q |
416 |
tccaaaatgt------------------atgtataggatggctgtctaatgtcgattactctccctctaccaaatcctagacttgttcatataactgtta |
497 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560891 |
tccaaaatgtgaaagtgaaggcttcttgatgtataggatggctgtctaatgtcgattactctccctctaccaaatcctagacttgttcatataactgtta |
42560792 |
T |
|
| Q |
498 |
tagtttgatattaatattgtggcatttgagtgtgtattaaagtggccaattcactttagcttggctggagtggtggggagtaaaatcttgcttccctcaa |
597 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42560791 |
tagtttgatattaatattatggcatttgagtgtgtattaaagtggccaattcactttagcttggctggagtggtgaggagtaaaatcttgcttccctcaa |
42560692 |
T |
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| Q |
598 |
ttgttggggatttagaggagagtaatgatttatctgatcttatatgtggcatcatcggcccaaaaagtattcctcaataaaatgaaacacattaggacct |
697 |
Q |
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| T |
42560691 |
ttgttggggatttagaggagagcaatgatttatctgatcttatatgtggcatca---gcccaaaaagtattcctcaataaaatgaagcacattaggacct |
42560595 |
T |
|
| Q |
698 |
aaaaagaaaattaaccattttcctttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccttccgctcgattaagcaa |
797 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
42560594 |
aaaaagaaaattaaccattttcctttttagaatccagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccctcccctcgattaagcaa |
42560495 |
T |
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| Q |
798 |
aaaacctgattaa-ttatcatgtagatcttgacttacgccataacaattaataagg-aaaaaaggtgttatactctaaccatttgtcataagtgattgat |
895 |
Q |
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| T |
42560494 |
aaaacctgattaatttatcatgtagatcttgacttacgccataacaattaataaggaaaaaaaggtgttatactctaaccatttgtcataagtgattgat |
42560395 |
T |
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| Q |
896 |
taattg-tttgttaaaactcaccgtgagta |
924 |
Q |
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| T |
42560394 |
taattgttttgttaaaactcaccgtgagta |
42560365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 42561590 - 42561385
Alignment:
| Q |
12 |
tgataggaggaaggaagtgtgacctcttcaatannnnnnnnattatgaactagtttagccattgaattacccttaaaaatatatggagatttgtattagg |
111 |
Q |
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| T |
42561590 |
tgataggaggaaggaagtgtgacctcttcaatatattttttattatgaactagtttagccattgaattacccttaaaaatatatggagatttgtattagg |
42561491 |
T |
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| Q |
112 |
ccattagtgataatggaaataagattagactctaatctaataaaaataggttgcgcatgttccattcctggaacattgcaatacaaatgcgagagcttaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42561490 |
ccattagtgataatggaaataagattagactctaatctaataaaaataggttgcgcatgttccattcctggaacattgctatacaaatgcgagagcttaa |
42561391 |
T |
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| Q |
212 |
ttaata |
217 |
Q |
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|||||| |
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| T |
42561390 |
ttaata |
42561385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 47714959 - 47714914
Alignment:
| Q |
133 |
agattagactctaatctaataaaaataggttgcgcatgttccattc |
178 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47714959 |
agattagactctaatctaataaaaataggttgtgcatgttccattc |
47714914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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