View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385-Insertion-6 (Length: 546)

Name: NF4385-Insertion-6
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385-Insertion-6
NF4385-Insertion-6
[»] chr4 (2 HSPs)
chr4 (10-400)||(40623325-40623706)
chr4 (479-546)||(40623179-40623246)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 40623706 - 40623325
Alignment:
10 taacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623706 taacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaaat 40623607  T
110 tcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtgaga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623606 tcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtgaga 40623507  T
210 attcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcggaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623506 attcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcggaa 40623407  T
310 tcaggtttcgccgtcgccgtcgtcgccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc 400  Q
    ||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40623406 tcaggtttcgccgtcg---------ccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc 40623325  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 40623246 - 40623179
Alignment:
479 tcagtagtaagaacaatgttaggtcatcactacattattcctaaaatttcgatagatttcttcctcat 546  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
40623246 tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttctttctcat 40623179  T

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