View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385-Insertion-6 (Length: 546)
Name: NF4385-Insertion-6
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Complemental strand, 40623706 - 40623325
Alignment:
| Q |
10 |
taacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaaat |
109 |
Q |
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| T |
40623706 |
taacaatgcccattcctcaaaaccgctttcaaagccgtatcttcatcataacccaaagcaacaatcttcgaaacagcttcattgtaaacaaactccaaat |
40623607 |
T |
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| Q |
110 |
tcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtgaga |
209 |
Q |
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| T |
40623606 |
tcttcaacaaaatctcctccaattgctcctcagtgcagtagccccaaccaggttcatcagaattagggtttggattgggaataggaatcagacagtgaga |
40623507 |
T |
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| Q |
210 |
attcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcggaa |
309 |
Q |
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| T |
40623506 |
attcaaagaatcaacacgagaaagatcgtatttgaagggtttgagacccgattcctctatggatttcgaaatcgcatctttgatttccgatgaatcggaa |
40623407 |
T |
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| Q |
310 |
tcaggtttcgccgtcgccgtcgtcgccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc |
400 |
Q |
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| T |
40623406 |
tcaggtttcgccgtcg---------ccgttgatcgtggtcgccgattagctctgatgtgtttctctctcaccgtacaacccatttcgattc |
40623325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 479 - 546
Target Start/End: Complemental strand, 40623246 - 40623179
Alignment:
| Q |
479 |
tcagtagtaagaacaatgttaggtcatcactacattattcctaaaatttcgatagatttcttcctcat |
546 |
Q |
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| T |
40623246 |
tcagtagtaagaataatgttaggtcatcactacattattcctaaaatttcgatagatttctttctcat |
40623179 |
T |
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