View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385-Insertion-7 (Length: 525)

Name: NF4385-Insertion-7
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385-Insertion-7
NF4385-Insertion-7
[»] chr3 (1 HSPs)
chr3 (8-525)||(49569643-49570160)


Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 49570160 - 49569643
Alignment:
Q  8 catacgacttaaccaggcatggagccaaggagggtgacaactgacaaatacgcaca--gaaattaactcaatcggcgcttagacatgtcgtaagtttgac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||||||    
T  49570160 catacgacttaaccaggcatggagccaaggagggtgacaactgacaaatgcgcacaaagaaattaactcaatcggtgcttagacatgtcgtaagtttgac 49570061  T
Q  106 tgctaatttttctcttcatttaaatgctacaaaacagagatggtaataacttgaaatgtgcttgccactttgagttattggcgcaaatgttgggatcaac 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49570060 tgctaatttttctcttcatttaaatgctacaaaacagagatggtaataacttgaaatgtgcttgccacttcgagttattggcgcaaatgttgggatcaac 49569961  T
Q  206 caaattgggccacattaacctctcaatttcaaccaataaaaaataattgggtgattaaattcaagtggtaaatgagctacgaaatcattcatttaagaga 305  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49569960 caaattgggccacattaacctctcaatttcaaccaataaaa--taattgggtgattaaattcaagtggtaaatgagctacgaaatcattcatttaagaga 49569863  T
Q  306 atcaaattcgaatttgaactaaaacaatatttgatcatactttatttactaactgatataattttcattatcggtgtccattttctttgaaataataatg 405  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  49569862 atcaaattcgaatttgaactaaaacaatatttgaacatactttatttactaattgatataattttcattatcggtgtccattttcttagaaataataatg 49569763  T
Q  406 atgattaagacaaaataattaaacaaaacatcattgtataatatttgaacaccaagagtacctccaagctgctattgtttgtattgacaacactaataat 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49569762 atgattaagacaaaataattaaacaaaacatcattgtataatatttgaactccaagagtacctccaagctactattgtttgtattgacaacactaataat 49569663  T
Q  506 ttccaacaccacttattcca 525  Q
    ||||||||||||||||||||    
T  49569662 ttccaacaccacttattcca 49569643  T

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