View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385-Insertion-7 (Length: 525)
Name: NF4385-Insertion-7
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4385-Insertion-7 |
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[»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 49570160 - 49569643
Alignment:
Q |
8 |
catacgacttaaccaggcatggagccaaggagggtgacaactgacaaatacgcaca--gaaattaactcaatcggcgcttagacatgtcgtaagtttgac |
105 |
Q |
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T |
49570160 |
catacgacttaaccaggcatggagccaaggagggtgacaactgacaaatgcgcacaaagaaattaactcaatcggtgcttagacatgtcgtaagtttgac |
49570061 |
T |
 |
Q |
106 |
tgctaatttttctcttcatttaaatgctacaaaacagagatggtaataacttgaaatgtgcttgccactttgagttattggcgcaaatgttgggatcaac |
205 |
Q |
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T |
49570060 |
tgctaatttttctcttcatttaaatgctacaaaacagagatggtaataacttgaaatgtgcttgccacttcgagttattggcgcaaatgttgggatcaac |
49569961 |
T |
 |
Q |
206 |
caaattgggccacattaacctctcaatttcaaccaataaaaaataattgggtgattaaattcaagtggtaaatgagctacgaaatcattcatttaagaga |
305 |
Q |
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T |
49569960 |
caaattgggccacattaacctctcaatttcaaccaataaaa--taattgggtgattaaattcaagtggtaaatgagctacgaaatcattcatttaagaga |
49569863 |
T |
 |
Q |
306 |
atcaaattcgaatttgaactaaaacaatatttgatcatactttatttactaactgatataattttcattatcggtgtccattttctttgaaataataatg |
405 |
Q |
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T |
49569862 |
atcaaattcgaatttgaactaaaacaatatttgaacatactttatttactaattgatataattttcattatcggtgtccattttcttagaaataataatg |
49569763 |
T |
 |
Q |
406 |
atgattaagacaaaataattaaacaaaacatcattgtataatatttgaacaccaagagtacctccaagctgctattgtttgtattgacaacactaataat |
505 |
Q |
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T |
49569762 |
atgattaagacaaaataattaaacaaaacatcattgtataatatttgaactccaagagtacctccaagctactattgtttgtattgacaacactaataat |
49569663 |
T |
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Q |
506 |
ttccaacaccacttattcca |
525 |
Q |
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T |
49569662 |
ttccaacaccacttattcca |
49569643 |
T |
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