View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385-Insertion-8 (Length: 459)
Name: NF4385-Insertion-8
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385-Insertion-8 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 21959928 - 21960379
Alignment:
| Q |
8 |
gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21959928 |
gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc |
21960027 |
T |
|
| Q |
108 |
caaatgcgacgtattaggttgcgcccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc |
207 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21960028 |
caaatgcgacgtattaggttgcgaccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc |
21960127 |
T |
|
| Q |
208 |
cctccaacgttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21960128 |
cctccaactttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc |
21960227 |
T |
|
| Q |
308 |
acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggcaatatctt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21960228 |
acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcagggtgcattgcaggcaatatctt |
21960327 |
T |
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| Q |
408 |
ccccttaaaacctgccttcatcttctcaaactcactctccccaagactcttc |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21960328 |
ccccttaaaacctgccttcatcttctcaaactcactctccccaagactcttc |
21960379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 29940967 - 29941087
Alignment:
| Q |
8 |
gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc |
107 |
Q |
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||||||||||||| || || || |||||||||||||||||||| |||||||||| ||| | ||| | |||||||||||||||||||||||||| |||||| |
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| T |
29940967 |
gttcaagcaaaccagtgaacacaactatcttcccaccaggtaaacaaaaggcatcaacaaaaggcttattcaccaccaaaatctcccaattcagtccatc |
29941066 |
T |
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| Q |
108 |
caaatgcgacgtattaggttg |
128 |
Q |
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|||||| || |||| |||||| |
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| T |
29941067 |
caaatgtgatgtataaggttg |
29941087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 23909382 - 23909485
Alignment:
| Q |
300 |
atcactccacacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggc |
399 |
Q |
| |
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||||| ||||| ||||| |||||||| |||||||||| || || | |||| ||||||||||||||| ||||||||||||||||| || ||| ||||| |
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| T |
23909382 |
atcacgccacatattctttttactcaagtctctcttcaatgcatcaaaaatacgattcgctatcatcctcactctcacactttcagggtgtatttcaggc |
23909481 |
T |
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| Q |
400 |
aata |
403 |
Q |
| |
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|||| |
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|
| T |
23909482 |
aata |
23909485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 23909281 - 23909328
Alignment:
| Q |
73 |
tcattcaccaccaaaatctcccaattcaatccatccaaatgcgacgta |
120 |
Q |
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||||||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
23909281 |
tcattcaccaccaaaataccccaattcaatccgtctaaatgcgacgta |
23909328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 904839 - 904396
Alignment:
| Q |
8 |
gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc |
107 |
Q |
| |
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|||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
904839 |
gttcgagcaaacccgtaaacacaactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaacccatc |
904740 |
T |
|
| Q |
108 |
caaatgcgacgtattaggttgcgcccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc |
207 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||| |
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| T |
904739 |
caaatgtgacgtattaggttgcgaccctcgctcctgacccttttttctactcttctgaacccatttatcatcaagaatctcatcttcccgatgccaattc |
904640 |
T |
|
| Q |
208 |
cctccaacgttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc |
307 |
Q |
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||| |||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
904639 |
ccttcaacattccctccattttcagtcaatgcactaattgtctccttccccttttcttcaccaaacacagtattttctgaagcataatctatatcactcc |
904540 |
T |
|
| Q |
308 |
acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggcaatatctt |
407 |
Q |
| |
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||||||||||||||||||||||||||||||| || || ||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||| | ||| |
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| T |
904539 |
acacattctccttactcaaccctctcttcaaagcttcaacaatatcatttgcaatcatcctcactcttacactttcagggtgcattgcaggcaacaactt |
904440 |
T |
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| Q |
408 |
ccccttaaaacctgccttcatcttctcaaactcactctccccaa |
451 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
904439 |
ccccttaaaacctgccttcatcttctcaaactctctctccccaa |
904396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 246237 - 246302
Alignment:
| Q |
310 |
acattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctc |
375 |
Q |
| |
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|||||||| |||||||||||||||||||| || || | |||| |||| ||||||||||||||||| |
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|
| T |
246237 |
acattctcattactcaaccctctcttcaatgcatcaatgatataattccctatcatcctaactctc |
246302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 246014 - 246048
Alignment:
| Q |
31 |
actatcttcccaccaggtaagcaaaaggcattaac |
65 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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|
| T |
246014 |
actatcttaccaccaggtaagcaaaaggcattaac |
246048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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