View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385-Insertion-8 (Length: 459)

Name: NF4385-Insertion-8
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385-Insertion-8
NF4385-Insertion-8
[»] chr6 (4 HSPs)
chr6 (8-459)||(21959928-21960379)
chr6 (8-128)||(29940967-29941087)
chr6 (300-403)||(23909382-23909485)
chr6 (73-120)||(23909281-23909328)
[»] chr3 (1 HSPs)
chr3 (8-451)||(904396-904839)
[»] chr7 (2 HSPs)
chr7 (310-375)||(246237-246302)
chr7 (31-65)||(246014-246048)


Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 21959928 - 21960379
Alignment:
8 gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21959928 gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc 21960027  T
108 caaatgcgacgtattaggttgcgcccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21960028 caaatgcgacgtattaggttgcgaccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc 21960127  T
208 cctccaacgttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
21960128 cctccaactttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc 21960227  T
308 acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggcaatatctt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
21960228 acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcagggtgcattgcaggcaatatctt 21960327  T
408 ccccttaaaacctgccttcatcttctcaaactcactctccccaagactcttc 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
21960328 ccccttaaaacctgccttcatcttctcaaactcactctccccaagactcttc 21960379  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 29940967 - 29941087
Alignment:
8 gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc 107  Q
    ||||||||||||| || || || |||||||||||||||||||| |||||||||| ||| | ||| | |||||||||||||||||||||||||| ||||||    
29940967 gttcaagcaaaccagtgaacacaactatcttcccaccaggtaaacaaaaggcatcaacaaaaggcttattcaccaccaaaatctcccaattcagtccatc 29941066  T
108 caaatgcgacgtattaggttg 128  Q
    |||||| || |||| ||||||    
29941067 caaatgtgatgtataaggttg 29941087  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 403
Target Start/End: Original strand, 23909382 - 23909485
Alignment:
300 atcactccacacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggc 399  Q
    ||||| ||||| |||||  ||||||||  |||||||||| || || | ||||  ||||||||||||||| ||||||||||||||||| || ||| |||||    
23909382 atcacgccacatattctttttactcaagtctctcttcaatgcatcaaaaatacgattcgctatcatcctcactctcacactttcagggtgtatttcaggc 23909481  T
400 aata 403  Q
    ||||    
23909482 aata 23909485  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 23909281 - 23909328
Alignment:
73 tcattcaccaccaaaatctcccaattcaatccatccaaatgcgacgta 120  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||||    
23909281 tcattcaccaccaaaataccccaattcaatccgtctaaatgcgacgta 23909328  T

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Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 904839 - 904396
Alignment:
8 gttcaagcaaacccgtaaatacgactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaatccatc 107  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
904839 gttcgagcaaacccgtaaacacaactatcttcccaccaggtaagcaaaaggcattaaccataggatcattcaccaccaaaatctcccaattcaacccatc 904740  T
108 caaatgcgacgtattaggttgcgcccctcgctcctgaccctttttcctactcttctgaacccatttgtcatcaagaacttcatcttcccggtgccaattc 207  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||| |||||||||    
904739 caaatgtgacgtattaggttgcgaccctcgctcctgacccttttttctactcttctgaacccatttatcatcaagaatctcatcttcccgatgccaattc 904640  T
208 cctccaacgttcccttcattttcagtcaatgcattaattgtctccttcccactttcttcaccaaacacagaattttctgaagcataatctatatcactcc 307  Q
    ||| |||| |||||| ||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
904639 ccttcaacattccctccattttcagtcaatgcactaattgtctccttccccttttcttcaccaaacacagtattttctgaagcataatctatatcactcc 904540  T
308 acacattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctcacactttcaggatgcattgcaggcaatatctt 407  Q
    ||||||||||||||||||||||||||||||| || || ||||||||||| || |||||||| ||||| ||||||||||| |||||||||||||| | |||    
904539 acacattctccttactcaaccctctcttcaaagcttcaacaatatcatttgcaatcatcctcactcttacactttcagggtgcattgcaggcaacaactt 904440  T
408 ccccttaaaacctgccttcatcttctcaaactcactctccccaa 451  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
904439 ccccttaaaacctgccttcatcttctcaaactctctctccccaa 904396  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 246237 - 246302
Alignment:
310 acattctccttactcaaccctctcttcaacgcctcgacaatatcattcgctatcatcctaactctc 375  Q
    |||||||| |||||||||||||||||||| || || |  |||| |||| |||||||||||||||||    
246237 acattctcattactcaaccctctcttcaatgcatcaatgatataattccctatcatcctaactctc 246302  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 246014 - 246048
Alignment:
31 actatcttcccaccaggtaagcaaaaggcattaac 65  Q
    |||||||| ||||||||||||||||||||||||||    
246014 actatcttaccaccaggtaagcaaaaggcattaac 246048  T

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