View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4385_high_1 (Length: 697)
Name: NF4385_high_1
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4385_high_1 |
 |  |
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[»] scaffold0042 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 20 - 686
Target Start/End: Complemental strand, 14767452 - 14766786
Alignment:
Q |
20 |
tggcgttgtcggacaatcgcgttacaaccagacaccgatgaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttaccaa |
119 |
Q |
|
|
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
14767452 |
tggcgttgtcgtacaatcgcgttacaaccagacactgacgaagaagttcgcataatctgcattgtcaatgctcgtggcaagtttaatccaccgttgccaa |
14767353 |
T |
 |
Q |
120 |
acggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaaaaa |
219 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
14767352 |
acggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgcggggaaactaatggaaaatccattagggtatgcactagagttagttaaaaa |
14767253 |
T |
 |
Q |
220 |
agctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatcttgtg |
319 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
14767252 |
agctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtcgaccacattttactgtggttagaagttatcttgtg |
14767153 |
T |
 |
Q |
320 |
tctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgctatacctggtg |
419 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
14767152 |
tctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctgtatatggtggaccagctaaaggaggagttggtgctatacctggtg |
14767053 |
T |
 |
Q |
420 |
ttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaaga |
519 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
14767052 |
ttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaaga |
14766953 |
T |
 |
Q |
520 |
gttagatagtgtgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttg |
619 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
14766952 |
gttagatagtgtgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttg |
14766853 |
T |
 |
Q |
620 |
tttcaatttcctttgctatgattggtgtgagactatatataatcacgatggtcaattttagtataat |
686 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
14766852 |
tttcaatttcctttgctatgattggtgtgagactatatataatcacgatggtcaattttagtataat |
14766786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 431 - 660
Target Start/End: Complemental strand, 14873248 - 14873019
Alignment:
Q |
431 |
tatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagttagatagtg |
530 |
Q |
|
|
|||||||| || ||||||||||||||| |||||||||||||||||| ||||||| ||| || |||||||||||| |||| |||||||||| ||| ||| |
|
|
T |
14873248 |
tatataccatttaaaaatgctaaaggaatagaaggtttggttataccagtttgtttgccaactaaagccatggagaggttcattaaagagttggatggtg |
14873149 |
T |
 |
Q |
531 |
tgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaaactaatgtttgtttcaatttcc |
630 |
Q |
|
|
||||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||| |||||||||| || | ||||||| |
|
|
T |
14873148 |
tgcttaagaacaaaattaaccaacctactatgggtggtccaaaacctagattcataatttctcccttgtaaaccttgaactaatgttcgtatgaatttcc |
14873049 |
T |
 |
Q |
631 |
tttgctatgattggtgtgagactatatata |
660 |
Q |
|
|
||||||||||| ||||||||||||||||| |
|
|
T |
14873048 |
tttgctatgatatgtgtgagactatatata |
14873019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 209 - 539
Target Start/End: Complemental strand, 14786346 - 14786016
Alignment:
Q |
209 |
ttagttaaaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaa |
308 |
Q |
|
|
|||||||| ||||| ||| || |||| || ||||| ||||||||||| |||| ||||||||||||||||||||| |||| || |||| ||| || | | |
|
|
T |
14786346 |
ttagttaagaaagcaaaagctaatgtcacccaagagtacatgcattcgattgcggatttaatggttatcaagggtcgacctcactttaatgtagtaaaat |
14786247 |
T |
 |
Q |
309 |
gttatcttgtgtctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgc |
408 |
Q |
|
|
|||||||| ||||| |||||||| | ||| || | | ||||| | ||||||||| ||| | || ||||| |||||||||| ||||| || ||||| |
|
|
T |
14786246 |
cctatcttgtttctgacgtgacacgcggcgggtttgagaaggttgattatggttgggggaaacccatctatggaggaccagctagaggagcagatggtga |
14786147 |
T |
 |
Q |
409 |
tatacctggtgttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaag |
508 |
Q |
|
|
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| | |
|
|
T |
14786146 |
tattcctggtcttgctagctttcatatacctttcaaaaatgctaaaggagaggaaggtttggttataccattttattttccaaatcaagtcatggagagg |
14786047 |
T |
 |
Q |
509 |
ttcgttaaagagttagatagtgtgcttaaga |
539 |
Q |
|
|
|| |||||||| | |||||||||||||||| |
|
|
T |
14786046 |
tttgttaaagaaatggatagtgtgcttaaga |
14786016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 122 - 560
Target Start/End: Complemental strand, 14878288 - 14877850
Alignment:
Q |
122 |
ggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaaaaaag |
221 |
Q |
|
|
|||||||| ||||| ||| | | |||||| || ||||||||||| || || |||||||| |||||||| || | |||||| | | |||||||| |||| |
|
|
T |
14878288 |
ggttactatggtaacgctatagtatttcccgttgcggttacaactgcaggaaaactaattgaaaatccgttggcttatgcattgaatttagttaagaaag |
14878189 |
T |
 |
Q |
222 |
ctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatcttgtgtc |
321 |
Q |
|
|
| ||| || ||| | |||| || ||||||||||| |||||||||||||||||||||||| | || | ||| ||| | || ||||| ||||| |
|
|
T |
14878188 |
caaaagctagtgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgcaggattgtatctagtgtc |
14878089 |
T |
 |
Q |
322 |
tgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgctatacctggtgtt |
421 |
Q |
|
|
|||||| ||||| || ||||| |||||||||| ||||||||||| |||||| | ||||| ||||||||||||||||| | ||||||| | |||||| |
|
|
T |
14878088 |
tgatgttacacgagctggatttcgagatgttgattttggttgggggaaagctgtttatggaggaccagctaaaggaggggatggtgctcttcctggtcaa |
14877989 |
T |
 |
Q |
422 |
gctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaaagagt |
521 |
Q |
|
|
||| |||| |||| || || | ||||| |||||||||| ||||||||||||||||| ||| ||| ||| |||||| |||||||| ||| |||||||||| |
|
|
T |
14877988 |
gctgtctttcatattccatttacaaatgataaaggagagaaaggtttggttataccagtttttttgccaactcaagtcatggagaggttggttaaagagt |
14877889 |
T |
 |
Q |
522 |
tagatagtgtgcttaagaacaacatcaaccaacctacta |
560 |
Q |
|
|
| |||||||| |||||||||||||| ||||| ||||||| |
|
|
T |
14877888 |
tggatagtgttcttaagaacaacattaaccagcctacta |
14877850 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 522
Target Start/End: Original strand, 14759446 - 14759852
Alignment:
Q |
116 |
ccaaacggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagtta |
215 |
Q |
|
|
||||| ||||| || ||||| ||| | || ||||| || ||||||||||| || || ||||| || ||||||||| | | ||||||| | | ||||||| |
|
|
T |
14759446 |
ccaaaaggttattatggtaacgctatagcgtttcccgttgcggttacaactgcaggaaaacttattgaaaatccactggagtatgcattgaatttagtta |
14759545 |
T |
 |
Q |
216 |
aaaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatct |
315 |
Q |
|
|
| ||||| ||| || |||| | |||| || ||||||||||| |||||||||||||||||||||||| | || | ||| ||| | | || ||| | |
|
|
T |
14759546 |
agaaagcaaaagctaatgtcaacaaagagtatatgcattcagtggcagatttaatggttatcaagggtcgtcctcctttaactactgctggattatattt |
14759645 |
T |
 |
Q |
316 |
tgtgtctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgctatacct |
415 |
Q |
|
|
||||||||| | |||||||| ||| | ||||||||||||||||||||||| |||||| | ||||| ||| ||||||||||| | || |||||| ||| |
|
|
T |
14759646 |
agtgtctgatattacacgtgctggacttggagatgttgaatttggttgggggaaagctctctatggaggaatggctaaaggaggtgatgttgctattcct |
14759745 |
T |
 |
Q |
416 |
ggtgttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgtta |
515 |
Q |
|
|
||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| || || ||||||| |||||||| ||| |||| |
|
|
T |
14759746 |
ggtcaagctgtatttcatatacctttcaaaaatgctaaaggagaagaaggtttggttataccgtttttcttgcctgctcaagtcatggagaggttggtta |
14759845 |
T |
 |
Q |
516 |
aagagtt |
522 |
Q |
|
|
||||||| |
|
|
T |
14759846 |
aagagtt |
14759852 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 524 - 608
Target Start/End: Complemental strand, 14872310 - 14872226
Alignment:
Q |
524 |
gatagtgtgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagaccttaa |
608 |
Q |
|
|
|||| |||||||||||||||||| | ||||||||||| | |||||| ||||||||| || |||||||||| ||||| ||||||| |
|
|
T |
14872310 |
gataatgtgcttaagaacaacattagccaacctactaaggatggtccgaaacctagtctcgttatttcttcattgtaaaccttaa |
14872226 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 14873457 - 14873394
Alignment:
Q |
102 |
ttaatccaccgttaccaaacggttactacggtaatgcttttgcatttcctgtcgcggttacaac |
165 |
Q |
|
|
|||| ||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||| |
|
|
T |
14873457 |
ttaacccacccttaccaaacggtaactacggtaacagttttgcatttcctgctgcggttacaac |
14873394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 20 - 607
Target Start/End: Complemental strand, 84453 - 83863
Alignment:
Q |
20 |
tggcgttgtcggacaatcgcgttacaaccagacaccgatgaagaagttcgcataatctgcattgtcaatgctcgtggcaagttt---aatccaccgttac |
116 |
Q |
|
|
||||||||||| ||| | |||||||||| ||| || | ||||||||||||||||||||||| ||| |||| ||| |||| ||| || | || ||| |
|
|
T |
84453 |
tggcgttgtcgtacactagcgttacaactagatactaacgaagaagttcgcataatctgcatcgtcgatgcacgtagcaaatttgttaacctacttgtac |
84354 |
T |
 |
Q |
117 |
caaacggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaa |
216 |
Q |
|
|
|||| |||||||| ||||| ||| | || |||| | || ||||||| | || |||||||| ||||| ||||| ||||||||| || |||||||| |
|
|
T |
84353 |
caaatggttactatggtaacgctatagcgcttcccgctgcaattacaactgtaggaaaactaattgaaaacccattgacgtatgcactggatttagttaa |
84254 |
T |
 |
Q |
217 |
aaaagctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatctt |
316 |
Q |
|
|
||||| ||| || |||| || |||| ||||||||||| | ||||||||| |||| |||||||||||||| ||||||||| | | || | | |
|
|
T |
84253 |
gaaagcaaaagctaatgtcaccgaagagtacatgcattccatggcagatttattggtaatcaagggtagacctcattttactacagcgaatgcttgttta |
84154 |
T |
 |
Q |
317 |
gtgtctgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgctatacctg |
416 |
Q |
|
|
||||||||||| |||||||| ||||| |||||||||| ||||||||||| |||||| | ||||| ||| ||||| || ||||| |||| ||| |||| |
|
|
T |
84153 |
gtgtctgatgttacacgtgctggatttagagatgttgattttggttgggggaaagctgtttatggaggattagctagagcaggagatggtactaatcctg |
84054 |
T |
 |
Q |
417 |
gtgttgctagcttttatatacctttcaaaaatgctaaaggagaggaaggtttggttataccactttgtttaccagctcaagccatggagaagttcgttaa |
516 |
Q |
|
|
|| || ||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| ||| |||||| ||| |||| ||| ||||| |
|
|
T |
84053 |
gtatttctaccatttatataccttttaaaaatgctaaaggagaggaaggttttgttataccagttttttttccaactcaagtcatcgagaggttggttaa |
83954 |
T |
 |
Q |
517 |
agagttagatagtgtgcttaagaacaacatcaaccaacctactattggtggtccaaaacctagtttcattatttcttccttgtagacctta |
607 |
Q |
|
|
|||||| |||| || |||||||||||||| ||| |||||||| |||| | |||| || | |||||| |||||| |||||| ||||| |
|
|
T |
83953 |
agagttggataaagttcttaagaacaacattaactcgcctactatgggtgatagaaaatctggaatcattaattcttcgttgtagtcctta |
83863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 122 - 466
Target Start/End: Complemental strand, 11999940 - 11999596
Alignment:
Q |
122 |
ggttactacggtaatgcttttgcatttcctgtcgcggttacaaccgccgggaaactaatggaaaatccattagggtatgcactagagttagttaaaaaag |
221 |
Q |
|
|
|||||||||||||||||||| | | ||||| | |||||||||| || |||||||| |||||||| || | ||||| |||| |||||||| |||| |
|
|
T |
11999940 |
ggttactacggtaatgctttcgtgtactctgtcacaattacaaccgcaggaaaactaattgaaaatccgttggcatatgctttagatttagttaagaaag |
11999841 |
T |
 |
Q |
222 |
ctaaatctgatgtaactcaagaatacatgcattcagttgcagatttaatggttatcaagggtagaccacattttactgtggttagaagttatcttgtgtc |
321 |
Q |
|
|
||| || |||| ||| |||| || ||||| ||| |||||||||||||||| |||||| |||| |||||| | | ||| ||| | || || |
|
|
T |
11999840 |
aaaaaactaatgttactaaagagtatatgcaatcaacgacagatttaatggttataaagggtcgaccgtattttaataagtcgagattatatttagtttc |
11999741 |
T |
 |
Q |
322 |
tgatgtgacacgtgccggattcggagatgttgaatttggttggggaaaagctatatatggtggaccagctaaaggaggagttggtgctatacctggtgtt |
421 |
Q |
|
|
|||||| |||||||| ||||| |||||||||| ||||||||||| ||| || | ||||| ||||||||||||||||||| ||||||| || ||| || |
|
|
T |
11999740 |
tgatgttacacgtgctggatttagagatgttgagtttggttgggggaaacctgtgtatggaggaccagctaaaggaggagacggtgctaatcccggtctt |
11999641 |
T |
 |
Q |
422 |
gctagcttttatatacctttcaaaaatgctaaaggagaggaaggt |
466 |
Q |
|
|
||| ||||| |||| |||| ||||||| |||||||||||||||| |
|
|
T |
11999640 |
gcttgctttcgtatagcttttaaaaatgttaaaggagaggaaggt |
11999596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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