View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385_high_2 (Length: 541)

Name: NF4385_high_2
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385_high_2
NF4385_high_2
[»] chr5 (4 HSPs)
chr5 (11-526)||(20064747-20065266)
chr5 (17-84)||(23210390-23210457)
chr5 (21-66)||(20060668-20060713)
chr5 (17-84)||(20058924-20058992)
[»] chr1 (1 HSPs)
chr1 (376-517)||(18578469-18578610)
[»] chr3 (2 HSPs)
chr3 (31-85)||(9033787-9033841)
chr3 (167-263)||(10268979-10269073)
[»] chr6 (1 HSPs)
chr6 (16-84)||(1177517-1177585)
[»] chr7 (2 HSPs)
chr7 (17-68)||(31443559-31443610)
chr7 (17-86)||(4173726-4173795)
[»] chr8 (1 HSPs)
chr8 (17-85)||(26136392-26136460)
[»] scaffold0555 (1 HSPs)
scaffold0555 (31-85)||(5982-6036)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 20064747 - 20065266
Alignment:
Q  11 agaatatctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagtgtgcataggtaaagtgtttaggac 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20064747 agaatatctggttttgtccttcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagtgtgcataggtaaagtgtttaggaa 20064846  T
Q  111 tagtatgcatagataaagtgtgtaggaatagtaaccaaacatcaacataatctatccccctttgacaacttcaaaaac-gaatagtaaccaaaatagaat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20064847 tagtatgcatagataaagtgtgtaggaatagtaaccaaacatcaacataatctatccccctttgacaacttcaaaaacggaatagtaaccaaaatagaat 20064946  T
Q  210 ataattaggaagcaataaaaagtaggaacgaacaagaatacaaccacaattgaaaaacttgtcggcatgaaacgttaagcacaaacacaatgtaggcatg 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20064947 ataattaggaagcaataaaaagtaggaacgaccaagaatacaaccacaattgaaaaacttgtcggcatgaaacgttaagcacaaacacaatgtaggcatg 20065046  T
Q  310 cnnnnnnnnnnngagaataaaagaagatatagttcaaaccaatgagaagaaacatggagagataaa----ttaccaaatttaagaaatgtaatgaatgtt 405  Q
    |           |||||||||||||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  20065047 c-aaaaaaataagagaataaaagaagatgtagttcaaaccaatgagaagaaacatggagagataaatatcttaccaaatttaagaaatgtaatgaatgtt 20065145  T
Q  406 tctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatttatttaagatatctggttccctatgaatcttgaggaaag 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  20065146 tctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatgtatctaagatatatggttccctatgaatcttgaggaaag 20065245  T
Q  506 agtcggatggtatcagttttg 526  Q
    |||||||||||||||||||||    
T  20065246 agtcggatggtatcagttttg 20065266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 23210390 - 23210457
Alignment:
Q  17 tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaaca 84  Q
    |||||||| |||| |||||||||||||| || |||||||||||||||||||| ||| |||| ||||||    
T  23210390 tctggtttcgtccttcttgttataatcaaaatcagtcggtatttgtttaccaaaaacactgctaaaca 23210457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 20060713 - 20060668
Alignment:
Q  21 gttttgtccatcttgttataatcacaaccagtcggtatttgtttac 66  Q
    ||||||||| ||||||||||| || ||||||||||| |||||||||    
T  20060713 gttttgtccttcttgttataaccaaaaccagtcggtgtttgtttac 20060668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 20058924 - 20058992
Alignment:
Q  17 tctggttttgtccatcttgttataatcacaaccagtcggta-tttgtttaccataaatactgataaaca 84  Q
    |||||||| |||| | |||||||||| | |||||||||||| ||||||||||| ||| |||| ||||||    
T  20058924 tctggtttggtcctttttgttataatgaaaaccagtcggtattttgtttaccaaaaacactggtaaaca 20058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 376 - 517
Target Start/End: Original strand, 18578469 - 18578610
Alignment:
Q  376 ttaccaaatttaagaaatgtaatgaatgtttctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatttatttaaga 475  Q
    ||||||||||| |||||||||| || ||||| |||||||| |||||| | |||||||||||||||||||||||||| || ||||| ||   ||| |||||    
T  18578469 ttaccaaattttagaaatgtaaggagtgtttataaggaagacatggtcaaaaggtaataaatattaggtcttgctttttgaaagcaagtggtatctaaga 18578568  T
Q  476 tatctggttccctatgaatcttgaggaaagagtcggatggta 517  Q
    ||  | ||||||||   ||||| ||||||||||| |||||||    
T  18578569 tacttagttccctacatatctttaggaaagagtcagatggta 18578610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 9033787 - 9033841
Alignment:
Q  31 tcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag 85  Q
    |||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  9033787 tcttgttataatcaaaaccagtcagtatttatttaccataaacactgataaacag 9033841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 10269073 - 10268979
Alignment:
Q  167 cccctttgacaacttcaaaaacgaatagtaaccaaaatagaatataattaggaagcaataaaaagtaggaacgaacaagaatacaaccacaattgaa 263  Q
    ||||||| ||||| |||||||   |||||||||||||||||||||||  ||| || ||||||| || | |||||||||| || ||||| ||||||||    
T  10269073 cccctttaacaacctcaaaaagagatagtaaccaaaatagaatataaggagg-aggaataaaatgt-gaaacgaacaagtatgcaaccgcaattgaa 10268979  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 1177517 - 1177585
Alignment:
Q  16 atctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaaca 84  Q
    ||||||||| |||| |||| ||||||||| |||||||| |||||||||||||| ||| |||| ||||||    
T  1177517 atctggtttggtccttcttattataatcaaaaccagtcagtatttgtttaccaaaaacactggtaaaca 1177585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31443559 - 31443610
Alignment:
Q  17 tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttacca 68  Q
    |||| ||| |||| |||||||||||||| |||||||||||||||||||||||    
T  31443559 tctgatttggtccttcttgttataatcaaaaccagtcggtatttgtttacca 31443610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 4173726 - 4173795
Alignment:
Q  17 tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagt 86  Q
    ||||| || |||| |||||||||||| |  |||||||||||||||||||||| ||| || | ||||||||    
T  4173726 tctggattggtccttcttgttataataaacaccagtcggtatttgtttaccaaaaacaccgttaaacagt 4173795  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 26136392 - 26136460
Alignment:
Q  17 tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag 85  Q
    |||||||| ||||  ||||||||||||| || |||||||||||||||||||| ||| || |||| ||||    
T  26136392 tctggtttggtcctgcttgttataatcaaaatcagtcggtatttgtttaccaaaaacaccgatatacag 26136460  T

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Target: scaffold0555 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 5982 - 6036
Alignment:
Q  31 tcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag 85  Q
    |||||||||||||| || ||||||||||||||||| || ||| |||| |||||||    
T  5982 tcttgttataatcaaaatcagtcggtatttgtttatcaaaaacactggtaaacag 6036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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