View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385_high_2 (Length: 541)
Name: NF4385_high_2
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4385_high_2 |
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[»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 20064747 - 20065266
Alignment:
Q |
11 |
agaatatctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagtgtgcataggtaaagtgtttaggac |
110 |
Q |
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T |
20064747 |
agaatatctggttttgtccttcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagtgtgcataggtaaagtgtttaggaa |
20064846 |
T |
 |
Q |
111 |
tagtatgcatagataaagtgtgtaggaatagtaaccaaacatcaacataatctatccccctttgacaacttcaaaaac-gaatagtaaccaaaatagaat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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T |
20064847 |
tagtatgcatagataaagtgtgtaggaatagtaaccaaacatcaacataatctatccccctttgacaacttcaaaaacggaatagtaaccaaaatagaat |
20064946 |
T |
 |
Q |
210 |
ataattaggaagcaataaaaagtaggaacgaacaagaatacaaccacaattgaaaaacttgtcggcatgaaacgttaagcacaaacacaatgtaggcatg |
309 |
Q |
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T |
20064947 |
ataattaggaagcaataaaaagtaggaacgaccaagaatacaaccacaattgaaaaacttgtcggcatgaaacgttaagcacaaacacaatgtaggcatg |
20065046 |
T |
 |
Q |
310 |
cnnnnnnnnnnngagaataaaagaagatatagttcaaaccaatgagaagaaacatggagagataaa----ttaccaaatttaagaaatgtaatgaatgtt |
405 |
Q |
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T |
20065047 |
c-aaaaaaataagagaataaaagaagatgtagttcaaaccaatgagaagaaacatggagagataaatatcttaccaaatttaagaaatgtaatgaatgtt |
20065145 |
T |
 |
Q |
406 |
tctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatttatttaagatatctggttccctatgaatcttgaggaaag |
505 |
Q |
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T |
20065146 |
tctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatgtatctaagatatatggttccctatgaatcttgaggaaag |
20065245 |
T |
 |
Q |
506 |
agtcggatggtatcagttttg |
526 |
Q |
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||||||||||||||||||||| |
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T |
20065246 |
agtcggatggtatcagttttg |
20065266 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 23210390 - 23210457
Alignment:
Q |
17 |
tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaaca |
84 |
Q |
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|||||||| |||| |||||||||||||| || |||||||||||||||||||| ||| |||| |||||| |
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T |
23210390 |
tctggtttcgtccttcttgttataatcaaaatcagtcggtatttgtttaccaaaaacactgctaaaca |
23210457 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 20060713 - 20060668
Alignment:
Q |
21 |
gttttgtccatcttgttataatcacaaccagtcggtatttgtttac |
66 |
Q |
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T |
20060713 |
gttttgtccttcttgttataaccaaaaccagtcggtgtttgtttac |
20060668 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 20058924 - 20058992
Alignment:
Q |
17 |
tctggttttgtccatcttgttataatcacaaccagtcggta-tttgtttaccataaatactgataaaca |
84 |
Q |
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|||||||| |||| | |||||||||| | |||||||||||| ||||||||||| ||| |||| |||||| |
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T |
20058924 |
tctggtttggtcctttttgttataatgaaaaccagtcggtattttgtttaccaaaaacactggtaaaca |
20058992 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 376 - 517
Target Start/End: Original strand, 18578469 - 18578610
Alignment:
Q |
376 |
ttaccaaatttaagaaatgtaatgaatgtttctaaggaagccatggttagaaggtaataaatattaggtcttgcttatttaaagctagatttatttaaga |
475 |
Q |
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||||||||||| |||||||||| || ||||| |||||||| |||||| | |||||||||||||||||||||||||| || ||||| || ||| ||||| |
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T |
18578469 |
ttaccaaattttagaaatgtaaggagtgtttataaggaagacatggtcaaaaggtaataaatattaggtcttgctttttgaaagcaagtggtatctaaga |
18578568 |
T |
 |
Q |
476 |
tatctggttccctatgaatcttgaggaaagagtcggatggta |
517 |
Q |
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|| | |||||||| ||||| ||||||||||| ||||||| |
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T |
18578569 |
tacttagttccctacatatctttaggaaagagtcagatggta |
18578610 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 9033787 - 9033841
Alignment:
Q |
31 |
tcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag |
85 |
Q |
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|||||||||||||| |||||||| |||||| ||||||||||| |||||||||||| |
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T |
9033787 |
tcttgttataatcaaaaccagtcagtatttatttaccataaacactgataaacag |
9033841 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 10269073 - 10268979
Alignment:
Q |
167 |
cccctttgacaacttcaaaaacgaatagtaaccaaaatagaatataattaggaagcaataaaaagtaggaacgaacaagaatacaaccacaattgaa |
263 |
Q |
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T |
10269073 |
cccctttaacaacctcaaaaagagatagtaaccaaaatagaatataaggagg-aggaataaaatgt-gaaacgaacaagtatgcaaccgcaattgaa |
10268979 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 1177517 - 1177585
Alignment:
Q |
16 |
atctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaaca |
84 |
Q |
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||||||||| |||| |||| ||||||||| |||||||| |||||||||||||| ||| |||| |||||| |
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T |
1177517 |
atctggtttggtccttcttattataatcaaaaccagtcagtatttgtttaccaaaaacactggtaaaca |
1177585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31443559 - 31443610
Alignment:
Q |
17 |
tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttacca |
68 |
Q |
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|||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |
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T |
31443559 |
tctgatttggtccttcttgttataatcaaaaccagtcggtatttgtttacca |
31443610 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 4173726 - 4173795
Alignment:
Q |
17 |
tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacagt |
86 |
Q |
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||||| || |||| |||||||||||| | |||||||||||||||||||||| ||| || | |||||||| |
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T |
4173726 |
tctggattggtccttcttgttataataaacaccagtcggtatttgtttaccaaaaacaccgttaaacagt |
4173795 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 26136392 - 26136460
Alignment:
Q |
17 |
tctggttttgtccatcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag |
85 |
Q |
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|||||||| |||| ||||||||||||| || |||||||||||||||||||| ||| || |||| |||| |
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T |
26136392 |
tctggtttggtcctgcttgttataatcaaaatcagtcggtatttgtttaccaaaaacaccgatatacag |
26136460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 5982 - 6036
Alignment:
Q |
31 |
tcttgttataatcacaaccagtcggtatttgtttaccataaatactgataaacag |
85 |
Q |
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|||||||||||||| || ||||||||||||||||| || ||| |||| ||||||| |
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T |
5982 |
tcttgttataatcaaaatcagtcggtatttgtttatcaaaaacactggtaaacag |
6036 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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