View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385_high_3 (Length: 436)

Name: NF4385_high_3
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385_high_3
NF4385_high_3
[»] chr7 (1 HSPs)
chr7 (18-429)||(27538672-27539083)
[»] chr4 (1 HSPs)
chr4 (18-429)||(46270910-46271321)


Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 27539083 - 27538672
Alignment:
18 ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27539083 ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt 27538984  T
118 cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagtaataaagcaactcctccaccaatacctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
27538983 cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagcaataaagcaactcctccaccaatacctcc 27538884  T
218 agcaatgattcctgtatgactcttggatttactagatttcctagccaatgacggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
27538883 agcaatgattcctgtatgactcttggatttactagatttcctagccaatgaaggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc 27538784  T
318 agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcaaagtaattggacttggaagctgtatttggatgcagtgcaagcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
27538783 agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcatagtaattggacttggaagctgtatttggatgcagtgcaagcc 27538684  T
418 acaggttctgct 429  Q
    |||||| |||||    
27538683 acaggtcctgct 27538672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 46271321 - 46270910
Alignment:
18 ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46271321 ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt 46271222  T
118 cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagtaataaagcaactcctccaccaatacctcc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
46271221 cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagcaataaagcaactcctccaccaatacctcc 46271122  T
218 agcaatgattcctgtatgactcttggatttactagatttcctagccaatgacggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
46271121 agcaatgattcctgtatgactcttggatttactagatttcctagccaatgaaggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc 46271022  T
318 agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcaaagtaattggacttggaagctgtatttggatgcagtgcaagcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
46271021 agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcatagtaattggacttggaagctgtatttggatgcagtgcaagcc 46270922  T
418 acaggttctgct 429  Q
    |||||| |||||    
46270921 acaggtcctgct 46270910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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