View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385_high_3 (Length: 436)
Name: NF4385_high_3
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 27539083 - 27538672
Alignment:
| Q |
18 |
ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27539083 |
ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt |
27538984 |
T |
|
| Q |
118 |
cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagtaataaagcaactcctccaccaatacctcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27538983 |
cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagcaataaagcaactcctccaccaatacctcc |
27538884 |
T |
|
| Q |
218 |
agcaatgattcctgtatgactcttggatttactagatttcctagccaatgacggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27538883 |
agcaatgattcctgtatgactcttggatttactagatttcctagccaatgaaggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc |
27538784 |
T |
|
| Q |
318 |
agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcaaagtaattggacttggaagctgtatttggatgcagtgcaagcc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27538783 |
agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcatagtaattggacttggaagctgtatttggatgcagtgcaagcc |
27538684 |
T |
|
| Q |
418 |
acaggttctgct |
429 |
Q |
| |
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|||||| ||||| |
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| T |
27538683 |
acaggtcctgct |
27538672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 46271321 - 46270910
Alignment:
| Q |
18 |
ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46271321 |
ggaagagtggaagtgtaacttccggttgtgttcgtcttggcagaagctgcagagtgtgaattaccgtaaagggaaaggggaagccagccagacggccctt |
46271222 |
T |
|
| Q |
118 |
cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagtaataaagcaactcctccaccaatacctcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46271221 |
cacttgtactagaatcttttccattcctacggcgacgagacgtgccaaaagcaaatagcccaatcaaaagcaataaagcaactcctccaccaatacctcc |
46271122 |
T |
|
| Q |
218 |
agcaatgattcctgtatgactcttggatttactagatttcctagccaatgacggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46271121 |
agcaatgattcctgtatgactcttggatttactagatttcctagccaatgaaggatcaattaagtcttgcacctgaggaggaggagggtttgtccctgcc |
46271022 |
T |
|
| Q |
318 |
agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcaaagtaattggacttggaagctgtatttggatgcagtgcaagcc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46271021 |
agattacctttactatcactgattttgaatatttctactccattcaagattgcgtcatagtaattggacttggaagctgtatttggatgcagtgcaagcc |
46270922 |
T |
|
| Q |
418 |
acaggttctgct |
429 |
Q |
| |
|
|||||| ||||| |
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|
| T |
46270921 |
acaggtcctgct |
46270910 |
T |
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