View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4385_high_4 (Length: 241)
Name: NF4385_high_4
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4385_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39210666 - 39210439
Alignment:
| Q |
1 |
atccgttaacaactttcaagtattcccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaat |
100 |
Q |
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|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39210666 |
atccgtaaacaacttccaagtatttccaggcaatcaatgacagttaattcaattttctcagcctgaaatgcagattgacaaaagtcaagccaattcaaat |
39210567 |
T |
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| Q |
101 |
tctgcatatagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttata---gaaggtagtgggaag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39210566 |
tctgcatatagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaagaaggtagtgggaag |
39210467 |
T |
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| Q |
198 |
taaaagggcagaaaaaccatatggtatg |
225 |
Q |
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||||||||||||| |||||||||||||| |
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| T |
39210466 |
taaaagggcagaagaaccatatggtatg |
39210439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 27510436 - 27510549
Alignment:
| Q |
112 |
acaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaaggtagtgggaagtaaaagggcagaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27510436 |
acaatcatacaactcaccaacattccaaaagtaacgtcagaagaggttaactcctaatcaattgtgttataaaaggtagtgggaagtaaaagggcagaag |
27510535 |
T |
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| Q |
212 |
aaccatatggtatg |
225 |
Q |
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| T |
27510536 |
aaccatatggtatg |
27510549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27510264 - 27510379
Alignment:
| Q |
1 |
atccgttaacaactttcaagtatt-cccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaa |
99 |
Q |
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|||||| |||||||| ||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
27510264 |
atccgtaaacaacttccaagtatagcccaggcaatcaatgacagttgattcagttttcccagcccgaaatgcagattgacaaaagccaagccaattcaaa |
27510363 |
T |
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| Q |
100 |
ttctgcatatagacaa |
115 |
Q |
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|||||||||||||||| |
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| T |
27510364 |
ttctgcatatagacaa |
27510379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 27271106 - 27271016
Alignment:
| Q |
25 |
cccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaattctgcatatagacaa |
115 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
27271106 |
cccaggaaatcaatgacagttaattcagttttcacagccggaaatgcagattgacaaaagccaagccaattcaaattatgcacatagacaa |
27271016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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