View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385_high_4 (Length: 241)

Name: NF4385_high_4
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385_high_4
NF4385_high_4
[»] chr1 (1 HSPs)
chr1 (1-225)||(39210439-39210666)
[»] chr8 (3 HSPs)
chr8 (112-225)||(27510436-27510549)
chr8 (1-115)||(27510264-27510379)
chr8 (25-115)||(27271016-27271106)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39210666 - 39210439
Alignment:
1 atccgttaacaactttcaagtattcccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaat 100  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
39210666 atccgtaaacaacttccaagtatttccaggcaatcaatgacagttaattcaattttctcagcctgaaatgcagattgacaaaagtcaagccaattcaaat 39210567  T
101 tctgcatatagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttata---gaaggtagtgggaag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
39210566 tctgcatatagacaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaagaaggtagtgggaag 39210467  T
198 taaaagggcagaaaaaccatatggtatg 225  Q
    ||||||||||||| ||||||||||||||    
39210466 taaaagggcagaagaaccatatggtatg 39210439  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 27510436 - 27510549
Alignment:
112 acaatcatacaactcaccaacattccaaaagtaacgtcagaagcggttaactccttaacaattgtgttatagaaggtagtgggaagtaaaagggcagaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||     
27510436 acaatcatacaactcaccaacattccaaaagtaacgtcagaagaggttaactcctaatcaattgtgttataaaaggtagtgggaagtaaaagggcagaag 27510535  T
212 aaccatatggtatg 225  Q
    ||||||||||||||    
27510536 aaccatatggtatg 27510549  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 27510264 - 27510379
Alignment:
1 atccgttaacaactttcaagtatt-cccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaa 99  Q
    |||||| |||||||| |||||||  ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
27510264 atccgtaaacaacttccaagtatagcccaggcaatcaatgacagttgattcagttttcccagcccgaaatgcagattgacaaaagccaagccaattcaaa 27510363  T
100 ttctgcatatagacaa 115  Q
    ||||||||||||||||    
27510364 ttctgcatatagacaa 27510379  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 27271106 - 27271016
Alignment:
25 cccaggcaatcaatgacagttaattcaattttctcagcccgaaatgcagattgacaaaagtcaagccaattcaaattctgcatatagacaa 115  Q
    |||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| |||| ||||||||    
27271106 cccaggaaatcaatgacagttaattcagttttcacagccggaaatgcagattgacaaaagccaagccaattcaaattatgcacatagacaa 27271016  T

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