View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4385_low_6 (Length: 217)

Name: NF4385_low_6
Description: NF4385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4385_low_6
NF4385_low_6
[»] chr3 (2 HSPs)
chr3 (66-217)||(48691339-48691486)
chr3 (13-45)||(48691292-48691324)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 48691339 - 48691486
Alignment:
66 attaagaagcgtacatgagacatagaacttgtttgatgtactgacgaataatatgaactatttattactctgagacaaaagttcccgccccattaacatc 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||     
48691339 attaagaagcgtacatgagacatagaacttgtttgatgtactgacgaataatatgaa----gtattactctgagacaaaagttcccgccccattaacata 48691434  T
166 caaaagttttactgaaaatgacatcggcaagtgagatgaaggttaactattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
48691435 caaaagttttactgaaaatgacatcggcaagtgagatgaaggttaactattt 48691486  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 48691292 - 48691324
Alignment:
13 catcaagaagtgaaataatttaatttttgatcc 45  Q
    |||||||||||||||||||||||||||||||||    
48691292 catcaagaagtgaaataatttaatttttgatcc 48691324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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