View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4386-Insertion-2 (Length: 1077)
Name: NF4386-Insertion-2
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 837; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 837; E-Value: 0
Query Start/End: Original strand, 8 - 880
Target Start/End: Original strand, 24889765 - 24890637
Alignment:
| Q |
8 |
attacatccagattcatgagactagttgggaacaaaatactaataaagttgataatcaatcacgtagctaggagacttcaaatagagagagaagcaccat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24889765 |
attacatccagattcatgagactagttgggaacaaaatactaatagagttgataatcaatcatgtagctaggagacttcaaatagagagagaagcaccat |
24889864 |
T |
|
| Q |
108 |
tgtctgcaggtgtaagattgagtatcttggtggctgcctctgaatcccatgattctggggattgataaagcgatgaggaagcaccatagcatgaagcaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24889865 |
tgtctgcaggtgtaagattgagtatcttggtggctgcctctgaagcccatgattctggggattgataaagcgatgaggaagcaccatagcatgaagcaag |
24889964 |
T |
|
| Q |
208 |
catgtcagtgttgatgactcctggattgagtgccactactgccattcctttcggcaactcttcagcaacagacttagtgagtccttcaattgcccatttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24889965 |
catgtcagtgttgatgactcctggattcagtgccactactgccattcctttaggcaactcttcagcaacagacttagtgagtccttcaattgcccatttg |
24890064 |
T |
|
| Q |
308 |
gatgcagaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctcccatttcattcttgttcttggcgatca |
407 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890065 |
gatgcacaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctcccatttcattcttgttcttggcgatca |
24890164 |
T |
|
| Q |
408 |
tcagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgtt |
507 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890165 |
ttagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgtt |
24890264 |
T |
|
| Q |
508 |
cttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgcgtgccatctcttcaacgctgtaattgcaccta |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
24890265 |
cttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgtgtgccatctcttcaacgttgtaattgcaccta |
24890364 |
T |
|
| Q |
608 |
acatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaagtcgagcttattgtcatgatcacgagaacatccgataatggtgt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890365 |
acatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaagtcgagcttattgtcatgatcacgagaacatccgataatggtgt |
24890464 |
T |
|
| Q |
708 |
ggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacaccagttatcatcactgtttgatttccatcactccttcctattccaac |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890465 |
ggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacaccagttatcatcactgtttgatttccatcactccttcctattccaac |
24890564 |
T |
|
| Q |
808 |
tcccatttcgatccctttacctctacctttctcactgccactaccaaccatctccaatccaattattcttcca |
880 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24890565 |
tcccatttcgatccctttacctctacctttctcactgccactaccaaccatctccaatccaattattcttcca |
24890637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 81 - 880
Target Start/End: Original strand, 26560379 - 26561178
Alignment:
| Q |
81 |
gacttcaaatagagagagaagcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaatcccatgattctggggattgataaagcga |
180 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||| || ||||||| || |
|
|
| T |
26560379 |
gacttcaaatagagagagaagaaccattatctgttggtgtaagattgagtatcttggtggctgcctccaaaacccatgattctgggaatcgataaagaga |
26560478 |
T |
|
| Q |
181 |
tgaggaagcaccatagcatgaagcaagcatgtcagtgttgatgactcctggattgagtgccactactgccattcctttcggcaactcttcagcaacagac |
280 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||| |||||||| |
|
|
| T |
26560479 |
tgaggaagcaccatagcaaaaagcaagcatgttagtgttgatgacccctggattgagtgccaccactgccattactttaggcaactcttcaacaacagac |
26560578 |
T |
|
| Q |
281 |
ttagtgagtccttcaattgcccatttggatgcagaataaggtgctacaagtgctgcacctgatcttccccaaccagaagacatgttcactattatccctc |
380 |
Q |
| |
|
|| || |||||||||||||||||||||||| || | ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26560579 |
ttggtaagtccttcaattgcccatttggatacacagtaaggtgctacaagtgcagcaactgatcttccccaacctgaagacatgttcactattatccctc |
26560678 |
T |
|
| Q |
381 |
ccatttcattcttgttcttggcgatcatcagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatcaaactcttc |
480 |
Q |
| |
|
|| ||||| ||| || || | ||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26560679 |
cctcttcatactttttatttttaaccatcaaaggtatgaagggcctcaacacattggcagcacctttcaagttggtatccatcaccaaatcaaactcttc |
26560778 |
T |
|
| Q |
481 |
agagggaacctcccacatcttactgttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataacaatgcgtgcc |
580 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||| ||| || |||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
26560779 |
agacggaacctcccacatcttgttgttcttgttaacgactccggcgccgttcactataatatctgaaggacctccatttttctccataaaaatgcacgcc |
26560878 |
T |
|
| Q |
581 |
atctcttcaacgctgtaattgcacctaacatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaagtcgagcttattgtcat |
680 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||| |||||||||||| ||| | |||||||||||||||||||||||||||| ||| || | |
|
|
| T |
26560879 |
atctcttcaactctgttattgcacctaacatcaatattgaggaatagatgatggttgttattgggaagttgagattgaaggaagtcgagttta---tcct |
26560975 |
T |
|
| Q |
681 |
gatcacgagaacatccgataatggtgtggccgcgattagcc---aattcaattgcaagagcccttccgaggcccttgctaacaccagttatcatcactgt |
777 |
Q |
| |
|
|||||| |||||||| ||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||| |||||||| |||| | |||||| | |
|
|
| T |
26560976 |
gatcacatgaacatccaataatggtgtggctgcgataagccaataattcaatcacaagaacccttccgaggcctttgctaacgttagttttaatcactat |
26561075 |
T |
|
| Q |
778 |
ttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccactaccaaccatctccaatccaattattctt |
877 |
Q |
| |
|
| ||||||| |||||||| |||||| ||| |||||||||||||||||| |||| ||| | |||| | |||||||| |||||| |||||||||| ||||| |
|
|
| T |
26561076 |
tcgatttccttcactcctccctatttcaattcccatttcgatcccttttcctccgcctctatcaccgtcactaccagccatcttcaatccaattcttctt |
26561175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 372 - 880
Target Start/End: Complemental strand, 26562944 - 26562433
Alignment:
| Q |
372 |
ttatccctcccatttcattcttgttcttggcgatcatcagaggaatgaagtgcctcaacacattggcagtacctttcaagttggtatccatcaccgaatc |
471 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
26562944 |
ttatccctccctcttcattcttgttctttttaaccatcaaagaaatgaagtgcctcaacacattgacattacctttcaagttggtatccatcaccaaatc |
26562845 |
T |
|
| Q |
472 |
aaactcttcagagggaacctcccacatcttactgttcttgttaatgacgccagcgccgttcactataatatctggaggacctccttttttctccataaca |
571 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
26562844 |
aaactcttcagacaaaacctcccacatcttgttgttcttgttaatgactccagcgtcgttcactataatatttggaggacctccatttttctccataaca |
26562745 |
T |
|
| Q |
572 |
atgcgtgccatctc--------ttcaacgctgtaattgcacctaacatcaacgctgatgaatagatgatgattggtgctgggaagttgagattgaaggaa |
663 |
Q |
| |
|
|||| |||||||| |||||| |||| ||| || ||| ||||| ||| ||||| || ||| ||| || |||||||||||||||||||||| |
|
|
| T |
26562744 |
atgcacgccatctcttcatctcttcaaccctgttcttgaacttaaaatcaatattgaggaataaat-atg-ttgttgttgggaagttgagattgaaggaa |
26562647 |
T |
|
| Q |
664 |
gtcgagcttattgtcatgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagcccttccgaggcccttgctaacacca |
763 |
Q |
| |
|
|||||||||| || ||||||| |||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26562646 |
gtcgagctta---tcttgatcacctgaacatccaataatggtgtggtcgtgataagccaattcaattgcaagagcccttccgaggcctttgctaacacca |
26562550 |
T |
|
| Q |
764 |
gttatcatcactgtttgatttccatcactccttcctattccaactcccatttcgatccctttacctctacctttctcactgccactaccaaccatctcca |
863 |
Q |
| |
|
||||||||||||||| ||||||| | ||||| |||||||||| ||| ||||| |||||||| |||| ||| |||||| | ||||||||||||| ||| |
|
|
| T |
26562549 |
gttatcatcactgttcgatttcctttgctcctccctattccaattccaatttcaatcccttttcctccgcctctctcaccgtcactaccaaccatttcct |
26562450 |
T |
|
| Q |
864 |
atccaattattcttcca |
880 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
26562449 |
atccaattcttcttcca |
26562433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 154 - 770
Target Start/End: Complemental strand, 56437152 - 56436542
Alignment:
| Q |
154 |
ccatgattctggggattgataaagcgatgaggaagcaccatagcatgaagcaagcatgtcagtgttgatgactcctggattgagtgccactactgccatt |
253 |
Q |
| |
|
||||||||| |||||||||||||| || | |||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| || || |||||| |
|
|
| T |
56437152 |
ccatgattcaggggattgataaagagaagcggaagcaccaaagcaagaagcaagcatgtcagtgttgatgacaccaggattgagtgcgacaacagccatt |
56437053 |
T |
|
| Q |
254 |
cctttcggcaactcttcagcaacagacttagtgagtccttcaattgcccatttggatgcagaataaggtgctacaagtgctgcacctgatcttccccaac |
353 |
Q |
| |
|
|||| || ||||||| ||| |||||||| |||||||||||||| ||||||||||||||| | ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
56437052 |
ccttgtggtaactctttagctacagactttgtgagtccttcaatagcccatttggatgcacagtaaggagcaacaagtgctgcacccgatcttccccaac |
56436953 |
T |
|
| Q |
354 |
cagaagacatgttcactattatccctcccatttcattcttgttcttggcgatcatcagaggaatgaagtgcctcaacacattggcagtacctttcaagtt |
453 |
Q |
| |
|
||||||||| ||| ||||| || ||| | | | ||||| |||||| ||||| ||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
56436952 |
cagaagacaagttaactataataccttctcctcctccattgtt------gatcatgagagggatgaaatgtctcaacacattggcagttcctttcaagtt |
56436859 |
T |
|
| Q |
454 |
ggtatccatcaccgaatcaaactcttcagagggaacctcccacatcttactgttcttgttaatgacgccagcgccgttcactataatatctggaggacct |
553 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||||| || || |||| |||||| |||| ||| || ||||| |
|
|
| T |
56436858 |
tgtatccatcaccaaatcaaactcttgagaaggaacttcccacatcttgttgttcttgttgatagtacctgcgctgttcacaataacatcaggtggaccc |
56436759 |
T |
|
| Q |
554 |
ccttttttctccataacaatgcgtgccatctcttcaacgctgtaattgcacctaacatcaacgctgatgaatagatgatgattggtgctgggaagt---t |
650 |
Q |
| |
|
|| || ||||||||||| |||| ||||||| || |||||||| |||| | || || ||||| ||| ||| ||||||| || | | |||||| |
|
|
| T |
56436758 |
cccttcatctccataacagtgcgagccatctgttgaacgctgtcattggagctgacgtcaacattgaggaagagatgattatgattatttggaagtaaaa |
56436659 |
T |
|
| Q |
651 |
gagattgaaggaagtcgagcttattgtcatgatcacgagaacatccgataatggtgtggccgcgattagccaattcaattgcaagagcccttccgaggcc |
750 |
Q |
| |
|
|||||||||| | || |||||| || ||| |||||||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| || | || |
|
|
| T |
56436658 |
gagattgaagagaatcaagctta---tcctgagcacgagaacaacctataatggtgtgacctcgattcgccaattcaatagcaagagccctaccaattcc |
56436562 |
T |
|
| Q |
751 |
cttgctaacaccagttatca |
770 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
56436561 |
tttgctaacaccagtaatca |
56436542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 81 - 346
Target Start/End: Complemental strand, 26563208 - 26562943
Alignment:
| Q |
81 |
gacttcaaatagagagagaagcaccattgtctgcaggtgtaagattgagtatcttggtggctgcctctgaatcccatgattctggggattgataaagcga |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||| || || |
|
|
| T |
26563208 |
gacttcaaatagagagagaagcaccattgtttgtgggtgtaagattgagtattttggtggcttcctccaaaacccatgattctggggattgatagagaga |
26563109 |
T |
|
| Q |
181 |
tgaggaagcaccatagcatgaagcaagcatgtcagtgttgatgactcctggattgagtgccactactgccattcctttcggcaactcttcagcaacagac |
280 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||| |||| |||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
26563108 |
tgaggaagcaccgtagcaagacgcaagtatgttagtgctgatgactcctgtattgagtgccatcactgccattcctttaggaaactcttcagcaacagac |
26563009 |
T |
|
| Q |
281 |
ttagtgagtccttcaattgcccatttggatgcagaataaggtgctacaagtgctgcacctgatctt |
346 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| | ||||||||||| ||||| |||||||||||| |
|
|
| T |
26563008 |
ttggtgagtccttcaatttcccatttggatgcaaagtaaggtgctacgagtgcagcacctgatctt |
26562943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 13541238 - 13541422
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
13541238 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatgcac |
13541336 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
13541337 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
13541422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 13541692 - 13541876
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
13541692 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatacac |
13541790 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
13541791 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
13541876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 26560276 - 26560320
Alignment:
| Q |
8 |
attacatccagattcatgagactagttgggaacaaaatactaata |
52 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26560276 |
attacatccagattcatgagactagttaggaacaaaatactaata |
26560320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 56437312 - 56437245
Alignment:
| Q |
79 |
gagacttcaaatagagagagaagcaccattgtctgcaggtgtaagattgagtatcttggtggctgcct |
146 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||||||||||| |
|
|
| T |
56437312 |
gagacttcaaacggagagagaagcaccattatctgctggagtaagattgagaatcatggtggctgcct |
56437245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 6e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 9670214 - 9670398
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9670214 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatgcac |
9670312 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
9670313 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
9670398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 9676748 - 9676932
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
9676748 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatacac |
9676846 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
9676847 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
9676932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 40464490 - 40464674
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
40464490 |
tgttaggaaatatctatcttatgcatagttgactctctttaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatacac |
40464588 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
40464589 |
agtaaattagatcccactgattgaggatcatggatgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
40464674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 982 - 1036
Target Start/End: Complemental strand, 11050165 - 11050111
Alignment:
| Q |
982 |
taaattagatcccactgattgaggatcatggctgtcatgacttaggattagctta |
1036 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
11050165 |
taaatcagatcccactgattgaggatcatgactgtcatgccttagaattagctta |
11050111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 982 - 1036
Target Start/End: Original strand, 11075663 - 11075717
Alignment:
| Q |
982 |
taaattagatcccactgattgaggatcatggctgtcatgacttaggattagctta |
1036 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |
|
|
| T |
11075663 |
taaatcagatcccactgattgagtatcattgctgtcatgccttagaattagctta |
11075717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 6e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 881 - 1067
Target Start/End: Complemental strand, 38592568 - 38592384
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttca-tgcac |
979 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
38592568 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttt-cctttcaatgcac |
38592470 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38592469 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
38592384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 881 - 1067
Target Start/End: Complemental strand, 38596164 - 38595980
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttca-tgcac |
979 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
38596164 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttt-cctttcaatgcac |
38596066 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
38596065 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
38595980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 25064941 - 25065125
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
25064941 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatgcac |
25065039 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25065040 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
25065125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 25069643 - 25069828
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
|
|
| T |
25069643 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagttattttccttttcaatgcac |
25069742 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25069743 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
25069828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 881 - 1067
Target Start/End: Original strand, 25127619 - 25127803
Alignment:
| Q |
881 |
tgttaggaaatatctatcttatgcatagttgactctccttaatgtgtatatatttaccttctctaatagttaactctagttatttttcctttc-atgcac |
979 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
25127619 |
tgttaggaaatatctatcttatgcatagttgactctcctaaatgtgtatatatttaccttctctaatagttaactctagtta-ttttcctttcaatgcac |
25127717 |
T |
|
| Q |
980 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtttgtaaattaatattatatatat |
1067 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
25127718 |
agtaaattagatcccactgattgaggatcatggctgtcatgacttaggattagcttaacatacgtctgtaaat--atattatatatat |
25127803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 930 - 1040
Target Start/End: Original strand, 26253491 - 26253601
Alignment:
| Q |
930 |
atatttaccttctctaatagttaactctagttatttttcctttca-tgcacagtaaattagatcccactgattgaggatcatggctgtcatgacttagga |
1028 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||| ||||||| | |||| ||||||||||||| ||||||| ||| |||| ||||||| ||||||| |
|
|
| T |
26253491 |
atatttaccttctctaaaagttgactctagttatttt-cctttcaatacacaagaaattagatcccattgattgaagattatggttgtcatgccttagga |
26253589 |
T |
|
| Q |
1029 |
ttagcttaacat |
1040 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26253590 |
ttagcttaacat |
26253601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University