View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386-Insertion-3 (Length: 1060)
Name: NF4386-Insertion-3
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 518 - 1053
Target Start/End: Original strand, 5017200 - 5017737
Alignment:
| Q |
518 |
ttacatttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
617 |
Q |
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| T |
5017200 |
ttacagttttgtctatttcaattcgccccattttcattttattaagatgaatatgattaacagaacaagcaagacaaagttgaaccagatatggctcttg |
5017299 |
T |
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| Q |
618 |
acagcaacagtagtagtaattcttcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgttccagtggccttgttttcctcagactgccac |
717 |
Q |
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| T |
5017300 |
acagcaacagtagtagtaattattcgcctgacaatgtgcctaactcaaatcctcaacaaccatcaatgtttcattggccttgttttcctcagactgccac |
5017399 |
T |
|
| Q |
718 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggctcaggtatttcagccgactcagctgttcggagcaaccatccctcccatttttcag |
817 |
Q |
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| T |
5017400 |
tcaagcaccatggcagcagcagttaccatatcctcaacaaggggcgcaggtatttcagccgactcagctgttcggagcaaacatccctcccatttttcag |
5017499 |
T |
|
| Q |
818 |
acattcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttcctaatatgttctaccatgctgggt |
917 |
Q |
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| T |
5017500 |
acattcaatggtaatggctggcaagcatttcctgttgcatcggaagctactaccacagcaacacataacttagttcctaatatgttctaccatgctggat |
5017599 |
T |
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| Q |
918 |
acacatttcctggatttccaggtttgtatgc-actttttctcttcagatgacttgtccttactgggatatccaggattgaacataatgatctatactgat |
1016 |
Q |
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| T |
5017600 |
acacatttcccggatttccaggtttgtatgcaactttttctcttcagatgacttgtccttactgggatttccaggattgaacataatgatctatactgat |
5017699 |
T |
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| Q |
1017 |
tgatatatcattttgtataaact-tttaaactcatttt |
1053 |
Q |
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| T |
5017700 |
tgatatatcattttgtataaactcttaaaactcatttt |
5017737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 5016284 - 5016609
Alignment:
| Q |
8 |
cattccccatgtgaagttacaacttacaatacaagcaccagagacaaaatctaaaacaacactttgagtatccaaccaagtagtcacaccaaatccattt |
107 |
Q |
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| T |
5016284 |
cattccccatgtgaagttacaacttacaatacaagcaccagagacaaaatctaaaacaacactt-gagtatccaaccaagtagtcacaccaaatccattt |
5016382 |
T |
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| Q |
108 |
cctactttcatatgtgccgtttggactttggtcaaaacccttaatgcttgaattcacagtttgccaccaattggctatacttcactctaggttataattg |
207 |
Q |
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| T |
5016383 |
cctactttcatatgtgccgtttggactttggtcaaaaccctta-tgcttgaattcacagtttgccaccaattggctatacttcactctaggttatagttg |
5016481 |
T |
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| Q |
208 |
taacactcgtaccttatatgaatatccctcactatggaaatcaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttc |
307 |
Q |
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| T |
5016482 |
taacactcgtaccttatacgaatatccctcactatggaaaccaagaacaaggataagaatcacgaacccctggtattttattttatttttgtgttatttc |
5016581 |
T |
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| Q |
308 |
taccaatatgttcaatcttctatttctt |
335 |
Q |
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| T |
5016582 |
taccaatatgttcaattttctatttctt |
5016609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 376 - 522
Target Start/End: Original strand, 5016606 - 5016750
Alignment:
| Q |
376 |
tcttcgctttctccttcgttttagctttgttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttattaaaaataacttt |
475 |
Q |
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| T |
5016606 |
tcttcgctttctccttcgttttagctt-gttaatgacgagatttgagacatttgcatttgaagatgaaatgctaatgatgtatttatt-aaaataacttt |
5016703 |
T |
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| Q |
476 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
522 |
Q |
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| T |
5016704 |
taacatttttattatttctaacaaattgagacaattgtatacttaca |
5016750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 791 - 843
Target Start/End: Original strand, 5005553 - 5005605
Alignment:
| Q |
791 |
ggagcaaccatccctcccatttttcagacattcaatggtaatggctggcaagc |
843 |
Q |
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| T |
5005553 |
ggagcaaatatccctcccatttttcagacattcaatgttaatggctggcaagc |
5005605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 595
Target Start/End: Original strand, 5005292 - 5005339
Alignment:
| Q |
548 |
ttttcattttattaagatgaatatgattaacagaacaagcaagacaaa |
595 |
Q |
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| T |
5005292 |
ttttcatttgattaagatgaatatgattagcagaacacgcaggacaaa |
5005339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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