View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4386-Insertion-4 (Length: 1056)

Name: NF4386-Insertion-4
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4386-Insertion-4
NF4386-Insertion-4
[»] chr8 (15 HSPs)
chr8 (8-1056)||(31636858-31637907)
chr8 (429-616)||(31646137-31646324)
chr8 (40-228)||(31646373-31646560)
chr8 (458-818)||(31629832-31630188)
chr8 (693-829)||(31646004-31646137)
chr8 (633-818)||(31656204-31656387)
chr8 (76-252)||(31651880-31652057)
chr8 (76-248)||(31656687-31656860)
chr8 (458-554)||(31656437-31656533)
chr8 (704-827)||(31651421-31651544)
chr8 (76-255)||(31630334-31630514)
chr8 (461-555)||(31651657-31651751)
chr8 (345-421)||(28237290-28237366)
chr8 (383-421)||(12392774-12392812)
chr8 (7-36)||(31646586-31646615)
[»] chr7 (3 HSPs)
chr7 (899-1002)||(12879423-12879526)
chr7 (347-421)||(8746507-8746581)
chr7 (347-421)||(33258483-33258557)
[»] chr1 (8 HSPs)
chr1 (345-422)||(31730521-31730598)
chr1 (369-422)||(12828059-12828112)
chr1 (344-421)||(46510473-46510550)
chr1 (345-421)||(12857614-12857690)
chr1 (374-420)||(43218339-43218385)
chr1 (344-421)||(2730393-2730470)
chr1 (376-421)||(23533045-23533090)
chr1 (360-421)||(27796824-27796885)
[»] chr4 (5 HSPs)
chr4 (344-421)||(6555873-6555950)
chr4 (345-421)||(15639007-15639083)
chr4 (374-421)||(45985066-45985113)
chr4 (372-421)||(32507964-32508013)
chr4 (384-421)||(34779255-34779292)
[»] chr2 (6 HSPs)
chr2 (345-421)||(6334110-6334186)
chr2 (345-421)||(20556063-20556139)
chr2 (376-421)||(10420210-10420255)
chr2 (345-422)||(10665351-10665428)
chr2 (376-421)||(13391325-13391370)
chr2 (345-421)||(35946032-35946109)
[»] chr5 (1 HSPs)
chr5 (345-419)||(29002146-29002220)
[»] chr3 (2 HSPs)
chr3 (384-422)||(48313717-48313755)
chr3 (345-421)||(36772562-36772636)
[»] scaffold0211 (1 HSPs)
scaffold0211 (344-421)||(15840-15917)
[»] chr6 (1 HSPs)
chr6 (373-418)||(27736983-27737028)


Alignment Details
Target: chr8 (Bit Score: 853; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 8 - 1056
Target Start/End: Complemental strand, 31637907 - 31636858
Alignment:
Q  8 gtgcacaccaatatcaacttcatatatattcatgaagtctacaatgattcaatgacaactaaactcatacttacaggtacatcaacattgttgctatacg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31637907 gtgcacaccaatatcaacttcatatatattcatgaagtctacaatgattcaatgacaactaaactcatacttacaggtacatcaacattgttgctatacg 31637808  T
Q  108 ctcacccccatgcttagtattaatctcatcttgaaagtagtcagtatgaaaatcgtacttttgtccaacttcataatggagaatattaacgtcttcgcca 207  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31637807 ctcacccccatgcttagtattaacctcatcttcaaagtagtcagtatgaaaatcgtacttttgtccaacttcataatggagaatattaacgtcttcgcca 31637708  T
Q  208 tgctctgcatgttatgaaacaaacttaagtaatggttgtttaagtatacggtaaattaaataaatggtttctataaatatccaaaattttnnnnnnntta 307  Q
    ||||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||        |||    
T  31637707 tgctctgcatgttttgaaacaaacttaaataatagttgtttaagtatatggtaaattaagtaaatggtttctataaatatccaaaattt-aaaaaattta 31637609  T
Q  308 cgaagactaaaaatgccggacaannnnnnnnactgaaactaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatc 407  Q
    |||||||||||||||||||||||        |||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31637608 cgaagactaaaaatgccggacaattttttttactgaaactaaaaagtatgattattttctgtaaagactaaaaccgaaattctgaatatttataagtatc 31637509  T
Q  408 atttacttaattaatgaaccgtgtatagaggcagacaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattcttttctcgatatcg 507  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31637508 atttacttaattaatgaaccgcgtatagaggcagacaaaatgcataaagaacacacctacaggtataaaagtaaaatcagcaattcttttctcgatatcg 31637409  T
Q  508 ctcaaaattttatcatatcctctgtcgataaaagttccagagcttgtctgcgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31637408 ctcaaaattttatcatatcctctgtcgataaaagttccagagcttgttcgtgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaa 31637309  T
Q  608 gtggcaatggaaatttaaacatggtaaacgagatttatattcaacattgaactcatactacgcttaataaagaattttggggtcggaaaaagaaaaatct 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  31637308 gtggcaatggaaatttaaacatggtaaacgagatttatattcaacattgaactcattatacgcttgataaagaattttggggtcggaaaaagaaaaatct 31637209  T
Q  708 aacctgctgttcacactctttcctgttgtatcatccacaacagtcgatttctgcatatcaggcttggctatattgattagatgttcacattcctcttttg 807  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31637208 aacctgctgttcacactctttcctgttgtatcatcaacaacagtcgatttctgcacatcaggcttggctatattgattagatgttcacattcctcttttg 31637109  T
Q  808 tctgctaagattaaccagctaaatgtaaacaatgtaacattataatactatatataaaacaggattaaccttgaacaacaattaaaatatataagagcat 907  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31637108 cctgctaagattaaccagctaaatgtaaacaatgtaacattataatactatatataaaacaggattaaccttgaacaacaattaaaatatataagagcat 31637009  T
Q  908 aatcatcgataactttatggaagtgtcttcacaaatgctaatgaacatgtgttagggaacatcgataattggctttcaatttgagcagccaaagtgtgca 1007  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| | ||    
T  31637008 aattatcgataactttatggaagtgtcttcacaaatgctaatgaacatgtattagggaacatcgataattggctttcaatatgagtagccaaagtttaca 31636909  T
Q  1008 tc-taatgtgtggcccacatt-nnnnnnntttgattggtaatgtttgagta 1056  Q
    || ||||||||||||||||||        ||||||||||||||||||||||    
T  31636908 tcttaatgtgtggcccacattaagatttttttgattggtaatgtttgagta 31636858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 429 - 616
Target Start/End: Complemental strand, 31646324 - 31646137
Alignment:
Q  429 tgtatagaggcagacaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcct 528  Q
    |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||| ||||    
T  31646324 tgtataaatgcagagaaaatgcataaagaacgcacctacaggtataaaagtaaaatcagcaattctttgctcaatattcctcagaattttatcatgtcct 31646225  T
Q  529 ctgtcgataaaagttccagagcttgtctgcgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaagtggcaatg 616  Q
    |||| |||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  31646224 ctgttgataaaagttccagagcttgtacgtgcactaaatgcaaaagaaatatgtaaacaaaaggtttggcatcaatgaagtggcaatg 31646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 31646560 - 31646373
Alignment:
Q  40 tgaagtctacaatgattcaatgacaactaaactcatacttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaatctcatctt 139  Q
    ||||||| ||||||||| ||||| |||| || ||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||||||||||||     
T  31646560 tgaagtcaacaatgattgaatga-aactgaagtcatacttataggtacatcaacattgttgctacacgctcacccccgttcttagtattaatctcatctg 31646462  T
Q  140 gaaagtagtcagtatgaaaatcgtacttttgtccaacttcataatggagaatattaacgtcttcgccatgctctgcatgttatgaaaca 228  Q
     |||| | |||| ||||   |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| || |||||||    
T  31646461 taaagaaatcaggatgaggttcgtacttttgtccaacttcataatggagaatattaacgctttcgccattctctgcatattgtgaaaca 31646373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 458 - 818
Target Start/End: Complemental strand, 31630188 - 31629832
Alignment:
Q  458 acgcacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgtctg 557  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||  |||| ||||| ||||  ||||||||| | ||||||||||||||||||  |    
T  31630188 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattcctcacaatttcatcacctcctctgtcaagaaaagttccagagcttgttcg 31630089  T
Q  558 cgcactaaatgcaaaagaaatatgtaagcaaaaggtttgacatgaatgaagtggcaatggaaatttaaacatggtaaacgagattt---atattcaacat 654  Q
      | ||||||||      ||||||||| |||||||||   ||| ||||||||| |||||| ||| |||||| || |||| ||||||   ||||||||||     
T  31630088 tacgctaaatgc------aatatgtaaacaaaaggttaaccatcaatgaagtgacaatggcaatctaaacaaggcaaacaagatttataatattcaacac 31629995  T
Q  655 tgaactcatactacgcttaataaagaattttggggtcggaaaaagaaaaatctaacctgctgttcacactctttcctgttgtatcatccacaacagtcga 754  Q
    |||||| | |     |||  |||| ||||||  ||| | ||||  ||||| |||||||||||| |  |||||||||||||  || ||| |||||||  ||    
T  31629994 tgaacttagagggaacttgctaaataatttt-tggttgaaaaataaaaaaactaacctgctgtccttactctttcctgtttcattatcaacaacagatga 31629896  T
Q  755 tttctgcatatcaggcttggctatattgattagatgttcacattcctcttttgtctgctaagat 818  Q
    ||| ||||||   ||||||||| ||||||||||||||||||||||||  |||||||||| ||||    
T  31629895 tttttgcatacttggcttggctgtattgattagatgttcacattccttctttgtctgcttagat 31629832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 693 - 829
Target Start/End: Complemental strand, 31646137 - 31646004
Alignment:
Q  693 gaaaaagaaaaatctaacctgctgttcacactctttcctgttgtatcatccacaacagtcgatttctgcatatcaggcttggctatattgattagatgtt 792  Q
    ||||||||||||||||||||| ||| |||||||||||| |||   |||||  ||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  31646137 gaaaaagaaaaatctaacctgttgtccacactctttcccgtt---tcatcgtcaacagtcgatttatgcatactaggcttggctatattgattagatgtt 31646041  T
Q  793 cacattcctcttttgtctgctaagattaaccagctaa 829  Q
    ||||||||||||||||||||| |||| || |||||||    
T  31646040 cacattcctcttttgtctgcttagatcaatcagctaa 31646004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 633 - 818
Target Start/End: Complemental strand, 31656387 - 31656204
Alignment:
Q  633 aaacgagatttatattcaacattgaactcatactacgcttaataaagaattttggggtcggaaaaagaaaaatctaacctgctgttcacactctttcctg 732  Q
    ||||||||||||||||||||||||||||||    |  ||| ||||||||||||| ||| |||||||  |||||||||||||||||||| |||||||||||    
T  31656387 aaacgagatttatattcaacattgaactcaagggatacttgataaagaattttgtggttggaaaaa--aaaatctaacctgctgttcagactctttcctg 31656290  T
Q  733 ttgtatcatccacaacagtcgatttctgcatatcaggcttggctatattgattagatgttcacattcctcttttgtctgctaagat 818  Q
    || | || || | |||   |||||| ||||||  |||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  31656289 ttttctcgtcaataacttccgatttatgcatactaggctttgctatattgattagatgttcgcattcctcttttgtctgctcagat 31656204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 76 - 252
Target Start/End: Complemental strand, 31652057 - 31651880
Alignment:
Q  76 acttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaatctcatcttgaaagtagtcagtatgaaaatcgtacttttgtccaa 175  Q
    |||||||||||||||| ||||||||||||||||| |||| |||   ||||| |||    |||   ||||||||||  ||||   || |||||||||||||    
T  31652057 acttacaggtacatcagcattgttgctatacgctgacccgcatatgtagtactaaaagtatccataaagtagtcataatgaggttcatacttttgtccaa 31651958  T
Q  176 cttcataatggagaatattaacgtcttcgccatgctctgcatgttatgaaacaaactt-aagtaatggttgtttaagt 252  Q
    ||||||||||||||| ||||| || ||| ||||||||||||| || ||||||| | || |||||||||||||||||||    
T  31651957 cttcataatggagaacattaaagttttcaccatgctctgcatattgtgaaacacagttcaagtaatggttgtttaagt 31651880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 76 - 248
Target Start/End: Complemental strand, 31656860 - 31656687
Alignment:
Q  76 acttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaatctcatcttgaaagtagtcagtatgaaaatcgtacttttgtccaa 175  Q
    |||||||||||||||| |||||||||||| |||| |||  ||||| ||||| ||| |  |||   ||||||||||  ||||   || |||||||||||||    
T  31656860 acttacaggtacatcagcattgttgctatgcgctgacctgcatgcctagtactaaacgtatccaaaaagtagtcataatgaggttcatacttttgtccaa 31656761  T
Q  176 cttcataatggagaatattaacgtcttcgccatgctctgcatgttatgaaaca-aacttaagtaatggttgttt 248  Q
    ||||||||||||||| ||||| |  ||||||||||||||||| || |||||||   || |||||||||||||||    
T  31656760 cttcataatggagaacattaaagctttcgccatgctctgcatattgtgaaacacggctcaagtaatggttgttt 31656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 31656533 - 31656437
Alignment:
Q  458 acgcacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgt 554  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| ||||| ||||  | ||||||| | ||| ||||||||||||||    
T  31656533 acgcacctacaggtataaaagtaaaatcagcgattcttttctcaatattgctcacaatttcatcaccttctctgtcaagaaatgttccagagcttgt 31656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 704 - 827
Target Start/End: Complemental strand, 31651544 - 31651421
Alignment:
Q  704 atctaacctgctgttcacactctttcctgttgtatcatccacaacagtcgatttctgcatatcaggcttggctatattgattagatgttcacattcctct 803  Q
    |||||||| ||||| |||||  |||||||||   || || | ||||| |||||| ||||||  |||||| ||||||||||||||||||||||||||||||    
T  31651544 atctaaccggctgtccacaccatttcctgtttcctcgtcaataacagccgatttatgcatactaggctttgctatattgattagatgttcacattcctct 31651445  T
Q  804 tttgtctgctaagattaaccagct 827  Q
    |||||||||| |||| || |||||    
T  31651444 tttgtctgctcagatcaatcagct 31651421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 31630514 - 31630334
Alignment:
Q  76 acttacaggtacatcaacattgttgctatacgctcacccccatgcttagtattaatctcatcttgaaagtagtcagtatgaaaatcgtacttttgtccaa 175  Q
    |||||||||||||||| ||||||||||||||||| ||| |||| |  |||||||   |||||   |||||||||   ||||  ||| |||||||||||||    
T  31630514 acttacaggtacatcagcattgttgctatacgctgacctccattcacagtattataatcatccgcaaagtagtctaaatgaggatcatacttttgtccaa 31630415  T
Q  176 cttcataatggagaatattaacgtcttcgccatgctctgcatgttatgaaaca-aacttaagtaatggttgtttaagtata 255  Q
    |||||||| |||||| ||||| |  |||||| | ||||||||  | |||||||   || ||||||||||||||||||||||    
T  31630414 cttcataacggagaacattaaagctttcgccgttctctgcataatgtgaaacacggctcaagtaatggttgtttaagtata 31630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 461 - 555
Target Start/End: Complemental strand, 31651751 - 31651657
Alignment:
Q  461 cacctacaggtataaaagtaaaatcagcaattcttttctcgatatcgctcaaaattttatcatatcctctgtcgataaaagttccagagcttgtc 555  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||   ||| |||| |||||  |||||| |  | ||||| |||||||||||||    
T  31651751 cacctacaggtataaaagtaaaatcagcaattcttctctcaatattcttcacaattctatcacttcctctcttaagaaaagctccagagcttgtc 31651657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 28237366 - 28237290
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| | || ||||  |||||||| | |||||||| ||||||||| | |||||||||||||||||    
T  28237366 actaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttatagggatcatttacttaattaa 28237290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 12392774 - 12392812
Alignment:
Q  383 gaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  12392774 gaaattctggaaatttataaggatcatttacttaattaa 12392812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 31646615 - 31646586
Alignment:
Q  7 agtgcacaccaatatcaacttcatatatat 36  Q
    ||||||||||||||||||||||||||||||    
T  31646615 agtgcacaccaatatcaacttcatatatat 31646586  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 899 - 1002
Target Start/End: Complemental strand, 12879526 - 12879423
Alignment:
Q  899 taagagcataatcatcgataactttatggaagtgtcttcacaaatgctaatgaacatgtgttagggaacatcgataattggctttcaatttgagcagcca 998  Q
    ||||||||| || |||| | | ||||||||||| ||||||||||||  |||||||||||||  || |||| ||||||||||||||||| ||| | |||||    
T  12879526 taagagcatgattatcgtttattttatggaagtatcttcacaaatgtcaatgaacatgtgtcgggcaacaccgataattggctttcaaattgcgtagcca 12879427  T
Q  999 aagt 1002  Q
    ||||    
T  12879426 aagt 12879423  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 8746507 - 8746581
Alignment:
Q  347 taaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||| ||||||| | || ||||| |||||||| | ||||| ||||| |||||| || ||||||||||||||||    
T  8746507 taaaaagtgtgattttattttgtaaggactaaaaacaaaattttggatctttataggtgtcatttacttaattaa 8746581  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 33258483 - 33258557
Alignment:
Q  347 taaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||| ||||||| | || ||||  |||||||| | |||||||| ||||||||| | |||||||||||||||||    
T  33258483 taaaaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttatagggatcatttacttaattaa 33258557  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 31730598 - 31730521
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaat 422  Q
    |||||||||||||||| | || ||||  |||||||| | |||||||| ||||||||| | ||||||||||||||||||    
T  31730598 actaaaaattgtgattttattttgtagggactaaaaacaaaattctgaatatttatagggatcatttacttaattaat 31730521  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 12828112 - 12828059
Alignment:
Q  369 taaagactaaaaccgaaattctggatatttataagtatcatttacttaattaat 422  Q
    ||||||||||||| ||||||||| ||||||||||| || ||||||||| |||||    
T  12828112 taaagactaaaactgaaattctgaatatttataagaattatttacttagttaat 12828059  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 46510550 - 46510473
Alignment:
Q  344 aactaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||| ||||||| |||| ||||  |||||||| | |||||||| ||||||||| | | |||||||||||||||    
T  46510550 aactaaaaagtgtgatttttttttgtagggactaaaaacaaaattctgaatatttatagggaccatttacttaattaa 46510473  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 12857690 - 12857614
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| | || ||||  |||||||| | |||||||| ||||||||||| | |||||||||||||||    
T  12857690 actaaaaagtgtgattttattttgtatggactaaaaacaaaattctgaatatttataaggaccatttacttaattaa 12857614  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 43218385 - 43218339
Alignment:
Q  374 actaaaaccgaaattctggatatttataagtatcatttacttaatta 420  Q
    ||||||| |||||||||||||||||||||| |  |||||||||||||    
T  43218385 actaaaaacgaaattctggatatttataagaactatttacttaatta 43218339  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 2730393 - 2730470
Alignment:
Q  344 aactaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||| ||||||| | || ||||| || |||||   |||||||| ||||||||||| || ||||||||||||||    
T  2730393 aactaaaaagtgtgattttattttgtaaggattaaaaataaaattctgaatatttataaggatgatttacttaattaa 2730470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 23533045 - 23533090
Alignment:
Q  376 taaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||    
T  23533045 taaaacagaaattttgaatatttataaggatcatttacttaattaa 23533090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 27796824 - 27796885
Alignment:
Q  360 tattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||| ||||||||||||||  |||||| |  |||||||||| |||||||||||| |||||    
T  27796824 tattttttgtaaagactaaaaatgaaattttaaatatttataactatcatttacttgattaa 27796885  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 6555950 - 6555873
Alignment:
Q  344 aactaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||| || ||||  ||| |||| |||||||||  ||||||||||||||||||| | | |||||||||||||||    
T  6555950 aactaaaaagtgcgatttgtttttgtatagactaaaaatgaaattctggatatttatagggaccatttacttaattaa 6555873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 15639083 - 15639007
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| | || ||||  |||||||| | |||||||| ||||||||||| ||||||| |||||||||    
T  15639083 actaaaaagtgtgattttattttgtagggactaaaaacaaaattctgaatatttataaggatcatttccttaattaa 15639007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 45985066 - 45985113
Alignment:
Q  374 actaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||| ||||||| |||||||||||||| |||||||| ||||||||    
T  45985066 actaaaaacgaaattatggatatttataagaatcatttatttaattaa 45985113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 32508013 - 32507964
Alignment:
Q  372 agactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||| | |||||||| ||||||||| | |||||||||||||||||    
T  32508013 agactaaaaacaaaattctgaatatttatagggatcatttacttaattaa 32507964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 34779255 - 34779292
Alignment:
Q  384 aaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  34779255 aaattctgaatatttataaggatcatttacttaattaa 34779292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 6334186 - 6334110
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| | || ||||| ||||||||   |||||||| ||||||||||| | |||||||||||||||    
T  6334186 actaaaaagtgtgattttattttgtaaggactaaaaataaaattctgaatatttataaggaccatttacttaattaa 6334110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 20556063 - 20556139
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| | || |||| ||||||||| | |||||||| ||||||||||  | |||||||||||||||    
T  20556063 actaaaaagtgtgattttattttgtagagactaaaaacaaaattctgaatatttataaagaccatttacttaattaa 20556139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 10420210 - 10420255
Alignment:
Q  376 taaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||| ||||||||||||| |||||||| || ||||||||||||||    
T  10420210 taaaaacgaaattctggatttttataagaataatttacttaattaa 10420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 10665428 - 10665351
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaat 422  Q
    |||||||| |||| || | || || ||||||||||| | |||||||  ||||||||||| | ||||||||||||||||    
T  10665428 actaaaaagtgtggttttattttgcaaagactaaaaacaaaattctaaatatttataaggaccatttacttaattaat 10665351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 13391370 - 13391325
Alignment:
Q  376 taaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||| |||||||||  ||||||||||| |||||||||||||||||    
T  13391370 taaaaacgaaattctaaatatttataagaatcatttacttaattaa 13391325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 35946032 - 35946109
Alignment:
Q  345 actaaaaattgtgattattttct-gtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| ||||||| |||| | ||| | ||||||| | |||||||| ||||||||||  |||||||||||||||||    
T  35946032 actaaaaagtgtgattttttttttgtagaaactaaaaacaaaattctgaatatttataaagatcatttacttaattaa 35946109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 29002146 - 29002220
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaatt 419  Q
    |||||||||||||||| | || ||||  || ||||| | |||||||| ||||||||||| | |||||||||||||    
T  29002146 actaaaaattgtgattttattttgtagggattaaaaacaaaattctgaatatttataagaaccatttacttaatt 29002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 48313717 - 48313755
Alignment:
Q  384 aaattctggatatttataagtatcatttacttaattaat 422  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  48313717 aaattctgaatatttataaggatcatttacttaattaat 48313755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 36772636 - 36772562
Alignment:
Q  345 actaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    |||||||| |||||||||||| ||||| |||| ||  | |||||||| ||||||||| | | |||||||||||||||    
T  36772636 actaaaaagtgtgattattttttgtaaggactgaa--caaaattctgaatatttatagggaccatttacttaattaa 36772562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 344 - 421
Target Start/End: Original strand, 15840 - 15917
Alignment:
Q  344 aactaaaaattgtgattattttctgtaaagactaaaaccgaaattctggatatttataagtatcatttacttaattaa 421  Q
    ||||||||| || ||||  ||| ||||  ||||||||  ||||||||||||||||||| | | |||||||||||||||    
T  15840 aactaaaaagtgcgatttatttttgtatggactaaaaatgaaattctggatatttatagggaccatttacttaattaa 15917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 27736983 - 27737028
Alignment:
Q  373 gactaaaaccgaaattctggatatttataagtatcatttacttaat 418  Q
    |||||||| |||||||||| ||||||||||| || |||||||||||    
T  27736983 gactaaaaacgaaattctgaatatttataaggattatttacttaat 27737028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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