View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386_high_3 (Length: 269)
Name: NF4386_high_3
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 5985319 - 5985083
Alignment:
| Q |
16 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatcgacatttaattttcgga |
115 |
Q |
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| T |
5985319 |
aatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatcgacatttaattttcgga |
5985220 |
T |
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| Q |
116 |
agggagtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
215 |
Q |
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| T |
5985219 |
agggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcag |
5985120 |
T |
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| Q |
216 |
tgcactcacagtttctgcatatatatcatcctcttct |
252 |
Q |
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| T |
5985119 |
tgcactcacagtttctgcatatatatcatccttttct |
5985083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 5921783 - 5921665
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaatt-----caccacctcagtgcactcacagtttctgc |
233 |
Q |
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| T |
5921783 |
taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgc |
5921684 |
T |
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| Q |
234 |
atatatatcatcctcttct |
252 |
Q |
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| T |
5921683 |
atatatatcatccttttct |
5921665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 5961013 - 5960911
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagtttctgcatata |
238 |
Q |
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| T |
5961013 |
taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacagtttgtgcatata |
5960914 |
T |
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| Q |
239 |
tat |
241 |
Q |
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||| |
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| T |
5960913 |
tat |
5960911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 5949661 - 5949569
Alignment:
| Q |
139 |
tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacagtttct |
231 |
Q |
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| T |
5949661 |
taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagtttct |
5949569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 30080693 - 30080761
Alignment:
| Q |
26 |
atgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacat |
94 |
Q |
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| T |
30080693 |
atgctacaatttatctttagatattagtagaaaaatatgatcaaagtatgttacgtgaatagtgcacat |
30080761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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