View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386_high_4 (Length: 261)
Name: NF4386_high_4
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 39429138 - 39429387
Alignment:
| Q |
12 |
agagacggtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctata |
111 |
Q |
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| T |
39429138 |
agagacggtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctata |
39429237 |
T |
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| Q |
112 |
acagctgttataatgtgtgagcttgcggtccaaacacttcctgcatatatttatttcaattaatcatgtcagtcatgttatatcatatgtattaccatat |
211 |
Q |
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| T |
39429238 |
acagctgttataatgtgtgagcttgcggtccaaacacttcctgcatatatttatttcaattaatcatgtcagtcatgttatatcatatgtattaccatat |
39429337 |
T |
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| Q |
212 |
cttnnnnnnnnttatatagcagaaaagaacaacataagctaaccaaaaac |
261 |
Q |
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| T |
39429338 |
cttaaaaaaaattatatagcagaaaagaacaacataagctaaccataaac |
39429387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 6249463 - 6249330
Alignment:
| Q |
19 |
gtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctg |
118 |
Q |
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| T |
6249463 |
gtaaccaaagagaataaaatcatgacagcaggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctg |
6249364 |
T |
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| Q |
119 |
ttataatgtgtgagcttgcggtccaaacacttcc |
152 |
Q |
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| T |
6249363 |
ttattatgtgtgaaattgcagtcaaaacacttcc |
6249330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 40203689 - 40203615
Alignment:
| Q |
48 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttat |
122 |
Q |
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| T |
40203689 |
aggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttat |
40203615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 40207857 - 40207739
Alignment:
| Q |
36 |
aatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagctt |
135 |
Q |
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| T |
40207857 |
aatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcactt |
40207758 |
T |
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| Q |
136 |
gcggtccaaacacttcctg |
154 |
Q |
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| T |
40207757 |
gcagtccaaacagttcctg |
40207739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 40199538 - 40199452
Alignment:
| Q |
36 |
aatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttat |
122 |
Q |
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| T |
40199538 |
aatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgttat |
40199452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 44324917 - 44325003
Alignment:
| Q |
47 |
caggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagc |
133 |
Q |
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| T |
44324917 |
caggaccagcaacccaacccatctgagctatagaccaggctaaggagagcaccccagatcctatcacagctgttattatgtgggagc |
44325003 |
T |
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