View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4386_low_11 (Length: 205)
Name: NF4386_low_11
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 28788332 - 28788500
Alignment:
| Q |
17 |
actttgaaatttaagtgaaaaatttcatttcaatcttattactcaatcatcatcgtgtgtcatcctaagttgaagcaaactcctaagtatttcattatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28788332 |
actttgaaatttaagtgaaaaatttcatttcaatcttattactcaatcatcatcgtgtgtcatcctaagttgaagcaaactcctaagtatttcattatta |
28788431 |
T |
|
| Q |
117 |
ttaagtgattgtattttacgtgcagaaatcagaagtagtgggtcaatgtcatctcacgttttttagtagtat |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
28788432 |
ttaagtgattg---tttacgtgcagaaatcagaagtagtgggtcaatgtcatctcgcattttttagttgtat |
28788500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University