View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4386_low_2 (Length: 480)

Name: NF4386_low_2
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4386_low_2
NF4386_low_2
[»] chr7 (7 HSPs)
chr7 (237-471)||(11843493-11843721)
chr7 (19-169)||(11842779-11842928)
chr7 (19-88)||(4463415-4463484)
chr7 (21-88)||(3997145-3997212)
chr7 (25-88)||(4407394-4407457)
chr7 (21-88)||(15468240-15468307)
chr7 (203-236)||(11843142-11843175)
[»] chr8 (4 HSPs)
chr8 (19-88)||(19742066-19742135)
chr8 (20-72)||(16290881-16290933)
chr8 (19-88)||(24527763-24527832)
chr8 (19-87)||(1046588-1046656)
[»] chr6 (7 HSPs)
chr6 (244-444)||(21303308-21303495)
chr6 (26-88)||(15828240-15828302)
chr6 (283-365)||(21156918-21156999)
chr6 (19-88)||(15561988-15562057)
chr6 (285-366)||(21259916-21259997)
chr6 (20-88)||(14641461-14641530)
chr6 (266-367)||(21246119-21246219)
[»] scaffold0076 (2 HSPs)
scaffold0076 (261-370)||(17435-17543)
scaffold0076 (283-337)||(12602-12656)
[»] chr5 (10 HSPs)
chr5 (27-88)||(17065244-17065305)
chr5 (100-138)||(31886613-31886651)
chr5 (37-88)||(29858612-29858663)
chr5 (293-370)||(21638576-21638652)
chr5 (29-87)||(24069926-24069984)
chr5 (19-88)||(25247594-25247663)
chr5 (19-88)||(25311378-25311447)
chr5 (20-48)||(15614762-15614790)
chr5 (20-48)||(21711563-21711591)
chr5 (31-87)||(38302082-38302138)
[»] chr4 (5 HSPs)
chr4 (19-88)||(44453065-44453134)
chr4 (19-88)||(13336974-13337043)
chr4 (19-88)||(41068881-41068950)
chr4 (21-87)||(22391549-22391615)
chr4 (19-87)||(16913356-16913424)
[»] chr1 (3 HSPs)
chr1 (19-88)||(3833411-3833480)
chr1 (19-88)||(31893138-31893206)
chr1 (20-48)||(34528944-34528972)
[»] chr3 (4 HSPs)
chr3 (26-87)||(2899960-2900021)
chr3 (100-142)||(19345651-19345693)
chr3 (24-88)||(11391909-11391973)
chr3 (24-72)||(51661709-51661757)
[»] chr2 (5 HSPs)
chr2 (20-88)||(28948896-28948964)
chr2 (37-88)||(5252073-5252124)
chr2 (19-86)||(24360852-24360919)
chr2 (20-87)||(30419003-30419070)
chr2 (20-48)||(40926486-40926514)
[»] scaffold0272 (1 HSPs)
scaffold0272 (267-316)||(8048-8097)
[»] scaffold0356 (1 HSPs)
scaffold0356 (20-88)||(13750-13818)
[»] scaffold0196 (1 HSPs)
scaffold0196 (24-72)||(793-841)
[»] scaffold0060 (1 HSPs)
scaffold0060 (293-363)||(10590-10659)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-66)||(1501-1547)
[»] scaffold0437 (1 HSPs)
scaffold0437 (20-88)||(11439-11508)
[»] scaffold0068 (1 HSPs)
scaffold0068 (20-48)||(2319-2347)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 237 - 471
Target Start/End: Original strand, 11843493 - 11843721
Alignment:
Q  237 tattgagtccaaaatattatactttggccacatgtatacaacagttttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactat 336  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||||||| ||||||||| ||     
T  11843493 tattgagtccaaaatattatactttggccacatgtatacaacggtttttta------aatcttcctcttgattgtttaagaatcttccatgtgggaatac 11843586  T
Q  337 tgaaaccaaaactatttaatatgtcttgttcttcttactgttctaaataattgttatttagaaggatgcctaagaacaaataatgaacccgtcatgacta 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11843587 tgaaaccaaaactatttaatatgtcttgttcttcttactgttctaaataattgttatttagaaggatgcctaagaacaaataatgaacccgtcatgacta 11843686  T
Q  437 ctgaccaatcaataaaaatatgtggctgatgatgt 471  Q
    |||||||||||||||||||||||||||||||||||    
T  11843687 ctgaccaatcaataaaaatatgtggctgatgatgt 11843721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 11842779 - 11842928
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagcnnnnnnnnnnngtacgacttaatcgcgaga 118  Q
    ||||||||||| ||||||||||||||||||  || |||| ||||||||| ||||||||||||||||||||           |||| ||||||||||||||    
T  11842779 cttcccggggtaccaacctagttgggatgtcggtgttgcttcctgatgtttgtctgtctccctgcttagcaaaaaaaaaaagtacaacttaatcgcgaga 11842878  T
Q  119 ctccattaattataagaacactatatttaaagtatatttagtcaagattta 169  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  11842879 ctccattaattataataacactat-tttaaagtatccttagtcaagattta 11842928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 4463484 - 4463415
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||| |||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||||    
T  4463484 cttcctggggtgccaacctagttgggatgtcagtgtggcctcctgatgtctgtctttctccctgcttagc 4463415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 3997212 - 3997145
Alignment:
Q  21 tcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  3997212 tcccgggatgccaacctagttgggatgtcggtgttgcctcctgatgtctgtctgtctctctgcttagc 3997145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 4407457 - 4407394
Alignment:
Q  25 ggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||||||||||||||  || | |||||||||||||||||| ||||||||||||||    
T  4407457 ggggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 4407394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 15468307 - 15468240
Alignment:
Q  21 tcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||| ||||||||||||||||||||||  || | |||||||||||||||||| ||||||||||||||    
T  15468307 tcccgaggtgccaacctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 15468240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 11843142 - 11843175
Alignment:
Q  203 gttaaataaattaagtggacgccataataagaaa 236  Q
    ||||||||||||||||||||||||||||||||||    
T  11843142 gttaaataaattaagtggacgccataataagaaa 11843175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 19742066 - 19742135
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||||||||| ||||||||||||||    
T  19742066 cttcccggggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 19742135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 16290881 - 16290933
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtc 72  Q
    |||||||||||||||||||||||||||||  || ||||||| |||||| ||||    
T  16290881 ttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatgtttgtc 16290933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 24527832 - 24527763
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||||||| ||| ||| |||||||||  || ||| | |||||||||| ||| ||||||||||||||    
T  24527832 cttcccggggtgtcaatctaattgggatgtcggtgttgtcccctgatgtctttctctctccctgcttagc 24527763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1046588 - 1046656
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    |||||||| |||||||| ||||||||||||  || ||| |||||||||||  ||| ||| |||||||||    
T  1046588 cttcccggagtgccaacatagttgggatgtcggtgttgtctcctgatgtccatctctcttcctgcttag 1046656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 444
Target Start/End: Original strand, 21303308 - 21303495
Alignment:
Q  244 tccaaaatattatactttggccacatgtatacaacagttttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaacc 343  Q
    |||||| | ||||||| ||||||||||||| | ||| | |||||||| ||||||||  ||||| |||||||||||||||  | |||| | ||||||||||    
T  21303308 tccaaactgttatactctggccacatgtattcgacattcttttataggtaaatctttgtcttggttgtttaagaatcttcgaagtggaattattgaaacc 21303407  T
Q  344 aaaactatttaatatgtcttgttcttcttactgttctaaataattgttatttagaaggatgcctaagaacaaataatgaacccgtcatgactactgacca 443  Q
    ||| ||||||  |||||||| || |            |||||||||||||| ||||||||| || ||| |||||||||| ||||||||||||| ||||||    
T  21303408 aaa-ctattttgtatgtcttctttt------------aaataattgttattaagaaggatgtctgagagcaaataatgagcccgtcatgactaatgacca 21303494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 15828240 - 15828302
Alignment:
Q  26 gggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||||||||||||||||||  || ||| |||||||||||||||| ||||||||||||||    
T  15828240 gggtgccaacctagttgggatgtcggtgttgtctcctgatgtctgtctctctccctgcttagc 15828302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 365
Target Start/End: Original strand, 21156918 - 21156999
Alignment:
Q  283 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgt 365  Q
    |||||||| ||| ||||||||||| |||||| ||||||||  ||||||||||||| ||||| ||||||||  |||||||||||    
T  21156918 ttttataggtaattcttcctcttggttgttttagaatcttcgatgtgggactatttaaacc-aaactattctatatgtcttgt 21156999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 15562057 - 15561988
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||  |||||||||||||||||||||  ||   |||||||||||| ||||| ||||||||||||||    
T  15562057 cttcccgatgtgccaacctagttgggatgtgggtgcggcctcctgatgtttgtctttctccctgcttagc 15561988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 366
Target Start/End: Original strand, 21259916 - 21259997
Alignment:
Q  285 ttatagataaatcttcctcttgattgttt-aagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgtt 366  Q
    |||||| ||||||||| |||||||| ||| ||||| |||| ||||||||||||   |||| ||||||||| ||||||||||||    
T  21259916 ttataggtaaatcttcttcttgattcttttaagaaactttgatgtgggactatcataacc-aaactattttatatgtcttgtt 21259997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 14641461 - 14641530
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgt-ctgtctccctgcttagc 88  Q
    |||||||||||||||||||||||||||||  || || |||| |||||| ||| || |||||||| |||||    
T  14641461 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 14641530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 367
Target Start/End: Complemental strand, 21246219 - 21246119
Alignment:
Q  266 acatgtatacaacagttttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgtcttgt 365  Q
    ||||||||||||   | |||| ||| ||||||||||||||  ||||||||||| ||   ||||||||||||   |||| ||||||||| |||||||||||    
T  21246219 acatgtatacaaggatattttgtaggtaaatcttcctcttagttgtttaagaacctccaatgtgggactatcataacc-aaactattttatatgtcttgt 21246121  T
Q  366 tc 367  Q
    ||    
T  21246120 tc 21246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 17435 - 17543
Alignment:
Q  261 tggccacatgtatacaacagttttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactattgaaaccaaaactatttaatatgt 360  Q
    |||||| ||||||||||  || |||||||| ||||||||||||| | || ||||||||||||  |||||||||||||  |||| || |||||| ||||||    
T  17435 tggccaaatgtatacaaacgtattttataggtaaatcttcctctcggttctttaagaatcttcgatgtgggactattataacc-aagctatttcatatgt 17533  T
Q  361 cttgttcttc 370  Q
    ||||||||||    
T  17534 cttgttcttc 17543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 12602 - 12656
Alignment:
Q  283 ttttatagataaatcttcctcttgattgtttaagaatctttcatgtgggactatt 337  Q
    |||||||  ||||||||||||||||||||||||| | | | ||||||||||||||    
T  12602 ttttataagtaaatcttcctcttgattgtttaagcaccatccatgtgggactatt 12656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 17065305 - 17065244
Alignment:
Q  27 ggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||    
T  17065305 ggtgccaacctagttgggatgttggtgtggcctcctgatgtctgtctttctccctgcttagc 17065244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 31886613 - 31886651
Alignment:
Q  100 gtacgacttaatcgcgagactccattaattataagaaca 138  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  31886613 gtacgacttaatcgtgagactccattaattataagaaca 31886651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 29858612 - 29858663
Alignment:
Q  37 tagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||  || | |||||||||||||||||| ||||||||||||||    
T  29858612 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 29858663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 21638652 - 21638576
Alignment:
Q  293 aaatcttcctcttgattgtttaagaatctttc-atgtgggactattgaaaccaaaactatttaatatgtcttgttcttc 370  Q
    |||||||||||| | ||| ||||||| ||||| ||||||||||||| ||||| ||||||||| ||||||||| ||||||    
T  21638652 aaatcttcctctaggttggttaagaa-ctttcgatgtgggactattcaaacc-aaactattttatatgtcttattcttc 21638576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 24069926 - 24069984
Alignment:
Q  29 tgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    ||||||| ||||||||||||  || ||| ||||||||| |||||| |||||||||||||    
T  24069926 tgccaacttagttgggatgtcggtgttgtctcctgatgcctgtctctctccctgcttag 24069984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25247663 - 25247594
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||| ||||| |||||||| |||||||||  || ||| ||||||||||||| ||  |||||||||||||    
T  25247663 cttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25247594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 25311447 - 25311378
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||| ||||| |||||||| |||||||||  || ||| ||||||||||||| ||  |||||||||||||    
T  25311447 cttcctggggtcccaacctatttgggatgtcggtgttgtctcctgatgtctgacttgctccctgcttagc 25311378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 15614762 - 15614790
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgt 48  Q
    |||||||||||||||||||||||||||||    
T  15614762 ttcccggggtgccaacctagttgggatgt 15614790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 21711591 - 21711563
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgt 48  Q
    |||||||||||||||||||||||||||||    
T  21711591 ttcccggggtgccaacctagttgggatgt 21711563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 38302138 - 38302082
Alignment:
Q  31 ccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    ||||||||||||||||||  || |||||| |||||||| |||| ||||||| |||||    
T  38302138 ccaacctagttgggatgtcggtgttgccttctgatgtccgtctctctccctacttag 38302082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 44453134 - 44453065
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||||||||||||||||||||   | | |||||||||||||||||| ||||||||||||||    
T  44453134 cttcccggggtgccaacctagttgggatgtcgatgtggcctcctgatgtctgtctttctccctgcttagc 44453065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 13336974 - 13337043
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||||||| ||| |||||||||||||  || | |||||||||||||||||| ||||||||||||||    
T  13336974 cttcccggggtgtcaatctagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 13337043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 41068881 - 41068950
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||| |||||||| |||||||||||  || ||||||| ||||| |||||| ||||||||||||||    
T  41068881 cttcccgggatgccaacccagttgggatgtcggtgttgcctcatgatgcctgtctctctccctgcttagc 41068950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 22391615 - 22391549
Alignment:
Q  21 tcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    |||| |||||||||||| ||||| || |  ||||||| ||||||||||||||||||||| |||||||    
T  22391615 tcccagggtgccaacctggttggaatttcggtattgcttcctgatgtctgtctgtctccatgcttag 22391549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 16913424 - 16913356
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    |||||||| ||||||||| |||||||||||  || ||| || | |||||||| || |||||||||||||    
T  16913424 cttcccggagtgccaacccagttgggatgtcggtgttgtcttcggatgtctgactttctccctgcttag 16913356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 3833480 - 3833411
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||||||||||||||||||||  || | |||||||||||||||||| ||||| ||||||||    
T  3833480 cttcccggggtgccaacctagttgggatgtcggtgtagcctcctgatgtctgtctttctccatgcttagc 3833411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 31893138 - 31893206
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||| |||| ||||||||||||||||||||  || | ||||||||||||||||||  |||||||||||||    
T  31893138 cttctcgggatgccaacctagttgggatgtcggtgt-gcctcctgatgtctgtcttcctccctgcttagc 31893206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 34528972 - 34528944
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgt 48  Q
    |||||||||||||||||||||||||||||    
T  34528972 ttcccggggtgccaacctagttgggatgt 34528944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 2899960 - 2900021
Alignment:
Q  26 gggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||| |||| ||||||||    
T  2899960 gggtgccaacctagttgggatgtcagtgtagcctcctgatgtctgtctttctctctgcttag 2900021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 19345651 - 19345693
Alignment:
Q  100 gtacgacttaatcgcgagactccattaattataagaacactat 142  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  19345651 gtacgacttaatcgtgagactccattaattataagaacactat 19345693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 11391909 - 11391973
Alignment:
Q  24 cggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||| ||| || |||||||||  || ||| |||||||||||||||| ||||| ||||||||    
T  11391909 cggggtgctaacttaattgggatgtcggtgttgtctcctgatgtctgtctctctccttgcttagc 11391973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 51661709 - 51661757
Alignment:
Q  24 cggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtc 72  Q
    |||||||||||||||||||||||||   | ||||||| |||||||||||    
T  51661709 cggggtgccaacctagttgggatgtcgatgttgcctcttgatgtctgtc 51661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 28948896 - 28948964
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||||||||||| ||||||||||||  || ||| ||||||||||||||   ||||||||||||||    
T  28948896 ttcccggggtgccaacatagttgggatgtcggtgttgtctcctgatgtctgttattctccctgcttagc 28948964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 5252124 - 5252073
Alignment:
Q  37 tagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    ||||||||||||  || | |||||||||||||||||| ||||||||||||||    
T  5252124 tagttgggatgtcggtgtggcctcctgatgtctgtctttctccctgcttagc 5252073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 24360919 - 24360852
Alignment:
Q  19 cttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgctta 86  Q
    ||||||||| ||||||||||| ||||||||  || |||  ||||||||||||||| ||||| ||||||    
T  24360919 cttcccgggatgccaacctagctgggatgtcggtgttgtttcctgatgtctgtctttctccttgctta 24360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 30419003 - 30419070
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttag 87  Q
    |||||| ||||||||||||||||||||||   | | || ||||| ||||||||| |||||||||||||    
T  30419003 ttcccgtggtgccaacctagttgggatgtcgatgtggcttcctggtgtctgtctttctccctgcttag 30419070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 40926514 - 40926486
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgt 48  Q
    |||||||||||||||||||||||||||||    
T  40926514 ttcccggggtgccaacctagttgggatgt 40926486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 8097 - 8048
Alignment:
Q  267 catgtatacaacagttttttatagataaatcttcctcttgattgtttaag 316  Q
    |||||||||||  || |||||||| |||||||||||||||||||||||||    
T  8097 catgtatacaagggtgttttataggtaaatcttcctcttgattgtttaag 8048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 13750 - 13818
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtctgtctccctgcttagc 88  Q
    |||||||||||||||||||||||||||||  |  |||  ||||||||||||||| |||||  |||||||    
T  13750 ttcccggggtgccaacctagttgggatgtcggcgttgtttcctgatgtctgtctctctcctcgcttagc 13818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 793 - 841
Alignment:
Q  24 cggggtgccaacctagttgggatgttagtattgcctcctgatgtctgtc 72  Q
    |||||||||||||||||||||||||  || ||||||| |||||||||||    
T  793 cggggtgccaacctagttgggatgtcggtgttgcctcttgatgtctgtc 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 363
Target Start/End: Complemental strand, 10659 - 10590
Alignment:
Q  293 aaatcttcctcttgattgtttaagaatctttc-atgtgggactattgaaaccaaaactatttaatatgtctt 363  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||| ||||| ||||||||| ||| |||||    
T  10659 aaatcttcctcttgtttgtttaagaa-ctttcgatgtgggactattcaaacc-aaactattttatacgtctt 10590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 1547 - 1501
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatg 66  Q
    |||||||||||||||||||||||||||||  || ||||||| |||||    
T  1547 ttcccggggtgccaacctagttgggatgtcggtgttgcctcttgatg 1501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11439 - 11508
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgttagtattgcctcctgatgtctgt-ctgtctccctgcttagc 88  Q
    |||||||||||||||||||||||||||||  || || |||| |||||| ||| || |||||||| |||||    
T  11439 ttcccggggtgccaacctagttgggatgtcggtgttccctcttgatgtttgtcctctctccctgtttagc 11508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 2319 - 2347
Alignment:
Q  20 ttcccggggtgccaacctagttgggatgt 48  Q
    |||||||||||||||||||||||||||||    
T  2319 ttcccggggtgccaacctagttgggatgt 2347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University