View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386_low_6 (Length: 250)
Name: NF4386_low_6
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 16791683 - 16791472
Alignment:
| Q |
10 |
ataatactgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacaggg |
109 |
Q |
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| T |
16791683 |
ataatactgctcaaccatccaactgatagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacaggg |
16791584 |
T |
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| Q |
110 |
agaaattaatgaacattgaacacttcaaagcacctgaaagaccagtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagt |
209 |
Q |
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| T |
16791583 |
agaaattaatgaacattgaacacttcaaagcacctgaaagaccggtgaatttagtgttgcgaacgattcaatgctttcaagcttgtttgaattgccaagt |
16791484 |
T |
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| Q |
210 |
tgaggcagaatt |
221 |
Q |
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| T |
16791483 |
tgaggcagaatt |
16791472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 17097221 - 17097106
Alignment:
| Q |
36 |
tagcgactcaaccatccataatcctctctaataatgcatctggttaaatcgccatacaagttatacatacagggagaaattaatgaacattgaacacttc |
135 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||||| | | ||||| ||| ||||||| ||||||||||||| ||||||||||||| |
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| T |
17097221 |
tagcgactcaaccagccatactcctctctaacaatgcatctggttaaaccagcgtacaaaatatgcatacagagagaaattaatgagcattgaacacttc |
17097122 |
T |
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| Q |
136 |
aaagcacctgaaagac |
151 |
Q |
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||| | ||||||||| |
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| T |
17097121 |
gaagtatctgaaagac |
17097106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 16791449 - 16791420
Alignment:
| Q |
221 |
ttccaaaaaggggtttacatttacgtctat |
250 |
Q |
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| T |
16791449 |
ttccaaaaaggggtttacatttacgtctat |
16791420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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