View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4386_low_7 (Length: 245)

Name: NF4386_low_7
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4386_low_7
NF4386_low_7
[»] chr1 (3 HSPs)
chr1 (17-228)||(11467794-11468005)
chr1 (57-223)||(12690371-12690537)
chr1 (65-180)||(34547751-34547866)
[»] chr6 (4 HSPs)
chr6 (17-228)||(8754465-8754676)
chr6 (60-220)||(12061748-12061908)
chr6 (60-180)||(12913845-12913965)
chr6 (82-220)||(20617423-20617561)
[»] chr7 (4 HSPs)
chr7 (26-128)||(41769101-41769203)
chr7 (60-223)||(18306354-18306517)
chr7 (85-223)||(19322568-19322706)
chr7 (85-183)||(17196275-17196373)
[»] chr5 (2 HSPs)
chr5 (57-223)||(26370527-26370693)
chr5 (73-190)||(27157495-27157612)
[»] scaffold0432 (1 HSPs)
scaffold0432 (78-223)||(7438-7586)
[»] chr8 (1 HSPs)
chr8 (60-223)||(13091359-13091522)
[»] chr4 (5 HSPs)
chr4 (60-223)||(48639071-48639234)
chr4 (73-223)||(36653238-36653388)
chr4 (57-223)||(43497650-43497816)
chr4 (78-202)||(9898110-9898234)
chr4 (78-142)||(39061271-39061335)
[»] scaffold0300 (1 HSPs)
scaffold0300 (57-202)||(7899-8044)
[»] chr3 (3 HSPs)
chr3 (78-223)||(15028430-15028575)
chr3 (60-223)||(17914696-17914859)
chr3 (85-223)||(15425274-15425412)
[»] chr2 (1 HSPs)
chr2 (117-226)||(24092783-24092892)
[»] scaffold0071 (1 HSPs)
scaffold0071 (85-223)||(36826-36964)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 11468005 - 11467794
Alignment:
Q  17 aatatgcaaccccagatagaggataggtaaatggcccatcttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaact 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11468005 aatatgcaaccccagatagaggataagtaaatggcccatcttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaact 11467906  T
Q  117 agcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaa 216  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  11467905 agcatgcttttgtggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaaagctctaatgttttcccaactacgatctccaa 11467806  T
Q  217 ttaacaaagtat 228  Q
    ||||||||||||    
T  11467805 ttaacaaagtat 11467794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 12690371 - 12690537
Alignment:
Q  57 ttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcg 156  Q
    ||||||| ||||| | |||| ||||| ||||||||||| |||||||| |||||| |||||| ||| |||||| ||||||||||||| || ||||| |||     
T  12690371 ttgcaattaagaacagaagctgcctcagccaaccaagaatcatgaatattaacaccaactaacatacttttgtggaagttcaccttaagaccagaagtca 12690470  T
Q  157 tctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
      ||||| ||||| |||| ||||||||| ||| |||| || ||||| || || || ||||| |||||    
T  12690471 cttcaaagagaagaagcagagctttcaacgctataatattggcccagcttcgctccccaatcaacaa 12690537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 34547866 - 34547751
Alignment:
Q  65 aagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaa 164  Q
    ||||| ||||||  |||| |||||||||||||||||||| |||||| |||||| ||| |||||| |||||||  |||| || |||||||| | |||| ||    
T  34547866 aagaacataagcttcctcagccaaccaagagtcatgaatattaacaccaactaacatacttttgtggaagttttccttaagaccagatgttgcctcataa 34547767  T
Q  165 agaaggagcaaagctt 180  Q
    ||||| ||||||||||    
T  34547766 agaagaagcaaagctt 34547751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 8754465 - 8754676
Alignment:
Q  17 aatatgcaaccccagatagaggataggtaaatggcccatcttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaact 116  Q
    |||| ||||||||| ||| |||||||||||| | |||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||| |    
T  8754465 aataggcaaccccaaataaaggataggtaaacgacccaacttgcaatgaagaagggaagccgcctcggccaaccaagagtcaggaatgttaacaccaatt 8754564  T
Q  117 agcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaa 216  Q
    |||||||||||  | || ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8754565 agcatgcttttatgaaaattcacctttaggccagacgtcgcctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacgatctccaa 8754664  T
Q  217 ttaacaaagtat 228  Q
    ||||||| ||||    
T  8754665 ttaacaaggtat 8754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 12061908 - 12061748
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||||||||| | | || ||| |||||||||||||||||||||| |||||| |||||| ||| |||||| |||||||||| || || ||||||||||| |    
T  12061908 caatgaagaatagaggctgccacggccaaccaagagtcatgaatattaacaccaactaacatacttttgtggaagttcactttgagaccagatgtcgttt 12061809  T
Q  160 caaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaa 220  Q
    |||| |||| ||| | |||||||| ||||||||| || ||||| || || || ||||||||    
T  12061808 caaagagaatgagaagagctttcagagctctaatattagcccagcttcgatccccaattaa 12061748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 12913845 - 12913965
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||| ||||| | |||| ||||| |||||||||||||||||||| |||||| |||||| ||| |||||| |||||||  |||| || |||||||| | ||    
T  12913845 caattaagaacaaaagctgcctcagccaaccaagagtcatgaatattaacaccaactaacatacttttgtggaagtttgccttaagaccagatgttgcct 12913944  T
Q  160 caaaaagaaggagcaaagctt 180  Q
    || ||||||| ||||||||||    
T  12913945 cagaaagaagaagcaaagctt 12913965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 220
Target Start/End: Original strand, 20617423 - 20617561
Alignment:
Q  82 cggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagcttt 181  Q
    ||||||||||||| | |||||| |||||| |||||| ||| |||||| |||||||||| || || |||||| |||| ||||| |||| ||| | ||||||    
T  20617423 cggccaaccaagaataatgaatattaacaccaactaacatacttttgtggaagttcactttaagaccagatctcgtttcaaagagaatgagaagagcttt 20617522  T
Q  182 caaagctctaatgtttgcccaactacggtctccaattaa 220  Q
    || ||||||||| || ||||| || || || ||||||||    
T  20617523 cagagctctaatattagcccagcttcgatccccaattaa 20617561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 41769101 - 41769203
Alignment:
Q  26 ccccagatagaggataggtaaatggcccatcttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgctt 125  Q
    ||||| |||||||||||||||| | |||| |||||||||||||||  ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  41769101 ccccaaatagaggataggtaaacgacccaacttgcaatgaagaagggaagccgcctcgaccaaccaaaagtcatgaatgttaacaccaactagcatgctt 41769200  T
Q  126 ttg 128  Q
    |||    
T  41769201 ttg 41769203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 18306354 - 18306517
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||| ||||| |||||  ||||| ||||||||||| ||||||||||||||| |||||| |||  ||||| |||||||||| || || || || |||   |    
T  18306354 caattaagaacataagttgcctctgccaaccaagaatcatgaatgttaacaccaactaacatatttttgtggaagttcactttaagacctgaagtctctt 18306453  T
Q  160 caaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    ||||||||||||| |||||||||| ||||||||| |||||||| ||||| || |||||||||||    
T  18306454 caaaaagaaggagtaaagctttcagagctctaatatttgcccagctacgatccccaattaacaa 18306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 19322706 - 19322568
Alignment:
Q  85 ccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaa 184  Q
    |||||||||| |||||||| |||||| |||||| ||| || ||| |||||||||| || ||||| || ||||  |||||||||||||||||||||||||     
T  19322706 ccaaccaagaatcatgaatattaacaccaactaacatactcttgtggaagttcactttaaggcctgaagtcgcttcaaaaagaaggagcaaagctttcag 19322607  T
Q  185 agctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    ||||||||| ||| |||| ||||| || |||||||||||    
T  19322606 agctctaatattttcccagctacgatccccaattaacaa 19322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 17196275 - 17196373
Alignment:
Q  85 ccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttca 183  Q
    |||||||||| |||||||| ||||||  ||||| |||  ||||| ||||||||||||| || |||||| |||  ||||| ||||| |||  ||||||||    
T  17196275 ccaaccaagaatcatgaatattaacacaaactaacatatttttgtggaagttcaccttaagaccagatatcgcatcaaagagaagaagcggagctttca 17196373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 26370527 - 26370693
Alignment:
Q  57 ttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcg 156  Q
    ||||||||||||| | | || ||||| ||||||||||| |||||||| |||||| |||||| ||| |||||| ||||||||||||| || ||||||||||    
T  26370527 ttgcaatgaagaacagaggctgcctcagccaaccaagaatcatgaatattaacaccaactaacatacttttgtggaagttcaccttgagaccagatgtcg 26370626  T
Q  157 tctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
      ||||| |||| ||| | |||||||| ||||||||| || |||||||| || || |||||||||||    
T  26370627 cttcaaagagaatgagaagagctttcagagctctaatattagcccaacttcgatccccaattaacaa 26370693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 27157495 - 27157612
Alignment:
Q  73 aagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggag 172  Q
    |||| ||||| ||||||||||| | ||||||||| ||||||||||  ||  ||||| | || |||||||| || || |||| || || ||||||||| ||    
T  27157495 aagctgcctcagccaaccaagaattatgaatgttgacatcaactaaaataattttgtgaaaattcaccttgagaccggatgacgccttaaaaagaagaag 27157594  T
Q  173 caaagctttcaaagctct 190  Q
     |||||||| || |||||    
T  27157595 taaagctttaaaggctct 27157612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 7586 - 7438
Alignment:
Q  78 gcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacc---tttaggccagatgtcgtctcaaaaagaaggagca 174  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||| |||||| ||||||||| |   || || || || ||||  |||||||||||||| |    
T  7586 gcctctgccaaccaagaatcatgaatgttaacaccaactaacatacttttgtggaagttcatcactttaagacctgaagtcgcttcaaaaagaaggagta 7487  T
Q  175 aagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    |||||||| |||||||||| |||||||||||||| || |||||||||||    
T  7486 aagctttccaagctctaatatttgcccaactacgatccccaattaacaa 7438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 13091359 - 13091522
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||| ||||| | |||| ||||| |||||||||||||||||||| |||||| |||||| ||| |||||| ||||||| ||||| || |||||||| | ||    
T  13091359 caattaagaacagaagctgcctcagccaaccaagagtcatgaatattaacaccaactaacatacttttgtggaagtttaccttaagaccagatgttgcct 13091458  T
Q  160 caaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    |||||||||| |||||||||| || || || ||| || |||||||| || || ||||| |||||    
T  13091459 caaaaagaagaagcaaagcttgcagagatcgaatattagcccaacttcgttccccaatcaacaa 13091522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 48639234 - 48639071
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||||||||| | | || ||||| ||||||||||| |||||||| |||||| |||||| |||||||||| |||||||||| || || ||||||||||  |    
T  48639234 caatgaagaacagaggctgcctcagccaaccaagaatcatgaatattaacaccaactaacatgcttttgtggaagttcactttgagaccagatgtcgctt 48639135  T
Q  160 caaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    |||| |||| ||| | |||||||| ||||||||| || ||||| || || || |||||||||||    
T  48639134 caaagagaatgagaagagctttcagagctctaatattagcccagcttcgatccccaattaacaa 48639071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 36653238 - 36653388
Alignment:
Q  73 aagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggag 172  Q
    |||| ||||| ||||||||||| |||||||| |||||| |||||| ||| ||||||  |||||||||||| || |||||||||   ||||| ||||| ||    
T  36653238 aagctgcctcagccaaccaagaatcatgaatattaacaccaactaacatacttttgttgaagttcaccttaagaccagatgtcacttcaaagagaagaag 36653337  T
Q  173 caaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    || ||||||||| |||||||| || ||||| || || || ||||| |||||    
T  36653338 cagagctttcaacgctctaatattggcccagcttcgctccccaatcaacaa 36653388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 43497816 - 43497650
Alignment:
Q  57 ttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcg 156  Q
    ||||||| ||||| | |||| |||||  |||||||||| |||||||| |||||| |||||| ||| |||||| ||||||||||| | || ||||| |||     
T  43497816 ttgcaattaagaacagaagctgcctcaaccaaccaagaatcatgaatattaacaccaactaacatacttttgtggaagttcaccataagaccagaagtca 43497717  T
Q  157 tctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
      ||||| ||||| |||| ||||||||| |||||||| || ||||| || || || ||||| |||||    
T  43497716 cttcaaagagaagaagcagagctttcaacgctctaatattggcccagcttcgctccccaatcaacaa 43497650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 9898110 - 9898234
Alignment:
Q  78 gcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaag 177  Q
    ||||| ||||||||||| |||||||| |||||| |||||| ||| |||| | ||||||||||||| || |||||||||  |||||| ||||  || | ||    
T  9898110 gcctctgccaaccaagaatcatgaatattaacaccaactaacatactttcgtggaagttcaccttaagaccagatgtcacctcaaagagaataagaagag 9898209  T
Q  178 ctttcaaagctctaatgtttgccca 202  Q
    |||||| ||||||||| || |||||    
T  9898210 ctttcagagctctaatattggccca 9898234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 39061271 - 39061335
Alignment:
Q  78 gcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctt 142  Q
    ||||| ||||||||||| |||||||| |||||| |||||| ||| |||||| |||||||||||||    
T  39061271 gcctctgccaaccaagaatcatgaatattaacaccaactaacatacttttgtggaagttcacctt 39061335  T

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Target: scaffold0300 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 202
Target Start/End: Complemental strand, 8044 - 7899
Alignment:
Q  57 ttgcaatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcg 156  Q
    ||||||| ||||| | |||| ||||| ||||||||||| |||||||| |||||| |||||| ||| |||||| ||||||||||||| || |||||||||     
T  8044 ttgcaattaagaacagaagctgcctcagccaaccaagaatcatgaatattaacaccaactaacatacttttgtggaagttcaccttaagaccagatgtca 7945  T
Q  157 tctcaaaaagaaggagcaaagctttcaaagctctaatgtttgccca 202  Q
      ||||| ||||| |||| ||||||||| |||||||| || |||||    
T  7944 cttcaaagagaagaagcagagctttcaacgctctaatattggccca 7899  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 15028575 - 15028430
Alignment:
Q  78 gcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaag 177  Q
    ||||||||||||||||| |||||||| |||||| | |||| |||  ||||| ||||||| || || || ||||| ||||  ||||| |||||||| | ||    
T  15028575 gcctcggccaaccaagaatcatgaatattaacacctactaacatatttttgtggaagttaactttgagaccagaagtcgcttcaaagagaaggagaatag 15028476  T
Q  178 ctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    |||||||||||||||| || |||||||| || || |||||||||||    
T  15028475 ctttcaaagctctaatattagcccaacttcgatccccaattaacaa 15028430  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 17914696 - 17914859
Alignment:
Q  60 caatgaagaagataagccgcctcggccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtct 159  Q
    |||||||||| | | || ||||| ||||||||||| |||||||| |||||  |||||| ||| |||||| |||||||||| || || ||||||||||  |    
T  17914696 caatgaagaatagaggctgcctcagccaaccaagaatcatgaatattaacgccaactaacatacttttgtggaagttcactttgagaccagatgtcgctt 17914795  T
Q  160 caaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaattaacaa 223  Q
    |||| |||| ||| | || ||||| ||||||||| || ||||| || || |  |||||||||||    
T  17914796 caaagagaatgagaagagttttcagagctctaatattagcccagcttcgattcccaattaacaa 17914859  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 15425274 - 15425412
Alignment:
Q  85 ccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaa 184  Q
    |||||||||| |||||||| |||||| |||||| |||  ||||| ||||||||||||| || ||||| |||   ||||| ||||| |||| |||||||||    
T  15425274 ccaaccaagaatcatgaatattaacaccaactaacatatttttgtggaagttcaccttaagaccagaagtcacttcaaagagaagaagcagagctttcaa 15425373  T
Q  185 agctctaatgtttgcccaactacggtctccaattaacaa 223  Q
     |||||||| || ||||| || || || ||||| |||||    
T  15425374 cgctctaatattggcccagcttcgctccccaatcaacaa 15425412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 226
Target Start/End: Complemental strand, 24092892 - 24092783
Alignment:
Q  117 agcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaaagctctaatgtttgcccaactacggtctccaa 216  Q
    ||||| |||||| |||||||||| || || |||||||||| |||||| |||| |||||||| ||||| ||||||||| || ||||||||||| || ||||    
T  24092892 agcatacttttgtggaagttcactttaagaccagatgtcgcctcaaagagaatgagcaaagttttcagagctctaatattagcccaactacgatccccaa 24092793  T
Q  217 ttaacaaagt 226  Q
    ||||||||||    
T  24092792 ttaacaaagt 24092783  T

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Target: scaffold0071 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 36964 - 36826
Alignment:
Q  85 ccaaccaagagtcatgaatgttaacatcaactagcatgcttttgaggaagttcacctttaggccagatgtcgtctcaaaaagaaggagcaaagctttcaa 184  Q
    |||||||||| |||||||| |||||| |||||| |||  ||||| ||||||||||||| || ||||| |||   ||||| ||||| |||| |||||||||    
T  36964 ccaaccaagaatcatgaatattaacaccaactaacatatttttgtggaagttcaccttaagaccagaagtcacttcaaagagaagaagcagagctttcaa 36865  T
Q  185 agctctaatgtttgcccaactacggtctccaattaacaa 223  Q
     |||||||| || ||||| || || || ||||| |||||    
T  36864 cgctctaatattggcccagcttcgctccccaatcaacaa 36826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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