View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386_low_8 (Length: 242)
Name: NF4386_low_8
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_low_8 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 38690660 - 38690449
Alignment:
| Q |
13 |
aagaatataattctgcatttatgtcttcatgttctttcacacaatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatata |
112 |
Q |
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| T |
38690660 |
aagaatataattttgcatttatgtcttcatgttctttcacacaatatctaattctggtctcagattccttccgttcacatagatactaccaaaaaatata |
38690561 |
T |
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| Q |
113 |
aaatatctgtcatactctttgataacaacttaaagacatgaataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtt |
212 |
Q |
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| T |
38690560 |
aaatatctgtcatactctttgataacaacttaaagacatgaataagctgcggctaaaccaaagccaattattatttaccttaatatgatattttatagtt |
38690461 |
T |
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| Q |
213 |
tgcttcaagcat |
224 |
Q |
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|||||||||||| |
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| T |
38690460 |
tgcttcaagcat |
38690449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 38589799 - 38589744
Alignment:
| Q |
105 |
aaaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagct |
160 |
Q |
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|||||| ||||||||| ||| |||||||||||||| ||| |||||||||||||||| |
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| T |
38589799 |
aaaatagaaaatatctatcagactctttgataacacctttaagacatgaataagct |
38589744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 12986 - 12931
Alignment:
| Q |
106 |
aaatataaaatatctgtcatactctttgataacaacttaaagacatgaataagctg |
161 |
Q |
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||||| ||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
12986 |
aaatagaaaatatctgtcacactcactgataacacctttaagacatgaataagctg |
12931 |
T |
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