View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4386_low_9 (Length: 240)
Name: NF4386_low_9
Description: NF4386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4386_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16791381 - 16791155
Alignment:
| Q |
1 |
cgttatactttttt-gaataaaaccaagttcacttaaattattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagt |
99 |
Q |
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| T |
16791381 |
cgttatactttttttgaataaaaccaagttcacttaatttattttgttaattggtggtagggcaattgcattgattcgacacggtccctgctgcagcagt |
16791282 |
T |
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| Q |
100 |
atccagaagtgaagtgaacaagttgaaggaagatcagtataatttggtatttaa----gcaacttaggttcaaaaccagttgatagcaacactcaaacca |
195 |
Q |
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| T |
16791281 |
atccagaagtgaagtgaacaagttgaaggaagatcagtataatttggtatttaattaggcaacttaggttcaaaaccagttgatagcaacactcaaacca |
16791182 |
T |
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| Q |
196 |
ccccactatgattgtatataaaattcc |
222 |
Q |
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| T |
16791181 |
ccctgctatgattgtatataaaattcc |
16791155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 16866115 - 16866026
Alignment:
| Q |
91 |
tgcagcagtatccagaagtgaagtgaacaagttgaaggaagatcagtataatttggtatttaagcaacttaggttcaaaaccagttgata |
180 |
Q |
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| T |
16866115 |
tgcagcagtgtccagaagtgaagtgaacaagttgaaggaagataagtataaataagtatttaagcagcttaggttcaaaattagttgata |
16866026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 17130830 - 17130909
Alignment:
| Q |
54 |
tggtagggcaattgcattgattcgacacggtccctgctgcagcagtatccagaagtgaagtgaacaagttgaaggaagatca |
135 |
Q |
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| T |
17130830 |
tggtaggccaattgcattgattcgaca--gtccctgccgaggcagtgttcagcagtgaggtgaacaagttgaaggcagatca |
17130909 |
T |
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