View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4387-Insertion-4 (Length: 892)

Name: NF4387-Insertion-4
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4387-Insertion-4
NF4387-Insertion-4
[»] chr1 (6 HSPs)
chr1 (8-576)||(39209906-39210443)
chr1 (603-866)||(39209648-39209911)
chr1 (288-470)||(24036791-24036978)
chr1 (505-648)||(24037047-24037194)
chr1 (101-172)||(7673907-7673978)
chr1 (704-745)||(24037282-24037323)
[»] chr8 (5 HSPs)
chr8 (481-866)||(27513835-27514218)
chr8 (8-262)||(27510545-27510799)
chr8 (288-471)||(27513624-27513807)
chr8 (329-471)||(8675102-8675245)
chr8 (505-651)||(8674890-8675040)
[»] chr3 (2 HSPs)
chr3 (317-471)||(9461134-9461298)
chr3 (704-745)||(9460971-9461012)
[»] chr2 (2 HSPs)
chr2 (298-410)||(38950770-38950885)
chr2 (131-172)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (293-360)||(18331878-18331945)
chr6 (362-414)||(18331979-18332031)
[»] chr4 (2 HSPs)
chr4 (121-259)||(42091774-42091912)
chr4 (78-236)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 39210443 - 39209906
Alignment:
Q  8 gtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatatt 107  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210443 gtatgaagggatta-cgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatatt 39210345  T
Q  108 cctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtccaaccgtcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||     
T  39210344 cctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattcttta-aaaatgtccaaccgtca 39210246  T
Q  208 gtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattctacactcac 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  39210245 gtaaaatagactttcacgttcctctttttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattctacactcac 39210146  T
Q  308 aacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcacca 407  Q
    |||||||||||||||||||||||||||||||||||                ||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  39210145 aacattggaatctaatctattcatattcaaattag----------------ttcaaaaaaatcaacctcttcatcatcaggcttgcagatagtttcatca 39210062  T
Q  408 acttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacaacaacacagaaatnnnnnnnnntcaaaacaacaacagccatccagtgag 507  Q
    |||||||||||||||||||||           ||||||| ||||||||||||||||||||||||         |||||||||||||| |||| |||||||    
T  39210061 acttcccttgtattttcaagg-----------ttcttctatggaagctacaacaacacagaaat--aaaaaaatcaaaacaacaacatccattcagtgag 39209975  T
Q  508 agagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagca 576  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39209974 agagagtgaacctcttcaccgagctcgatagctctttcaatagcagcatcgcgagctttcgacttagca 39209906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 603 - 866
Target Start/End: Complemental strand, 39209911 - 39209648
Alignment:
Q  603 ttagcatgaatttcagatcgtttttcttcgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtctctgttctggttttttctgcgg 702  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39209911 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtcactgttctggttttttctgcgg 39209812  T
Q  703 ctcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 802  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39209811 ttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcagagaagaaagggaagaagattgga 39209712  T
Q  803 tggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggaga 866  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39209711 tggtggcaaggagaaggaggtgaggggaaggacgataaagaaggggaaaacagtgtgagggaga 39209648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 288 - 470
Target Start/End: Original strand, 24036791 - 24036978
Alignment:
Q  288 aatatatattctacactcacaacattggaatctaatctattcatattcaaatt-agttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatca 386  Q
    ||||||||||||||||||| ||||||| ||||| || |||| |||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||    
T  24036791 aatatatattctacactcaaaacattgaaatctgatttatttatatacaaatttagatcaaaacaatcaaaact-aaaaaactcaacctcttcatcatca 24036889  T
Q  387 gg----cttgcagatagtttcaccaacttcccttgtattttcaagg-tcttcggcaccttcttctctggaagctacaacaacacagaaa 470  Q
    ||    |||||||||||||||| ||||||  ||||||| ||| |   ||||||||| ||| ||||| ||||||||||||||||||||||    
T  24036890 ggatggcttgcagatagtttcatcaacttagcttgtatcttcgatcatcttcggcagctttttctccggaagctacaacaacacagaaa 24036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 505 - 648
Target Start/End: Original strand, 24037047 - 24037194
Alignment:
Q  505 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 600  Q
    ||||||||| ||||||||||||||| ||||||||| |||| || | || ||||||||||||||||||||||  |||||| || |||||| |||     ||    
T  24037047 gagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttga 24037146  T
Q  601 gtttagcatgaatttcagatcgtttttcttcgttcttactcatcgaag 648  Q
    |||||||||||||||||||||||||| |||  |||||| |||||||||    
T  24037147 gtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag 24037194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
Q  101 gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 172  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||| |  |||| |||||||||||||||||    
T  7673907 gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa 7673978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 745
Target Start/End: Original strand, 24037282 - 24037323
Alignment:
Q  704 tcctcttcccaccgaaagccaattagaaggtttgggaaggtt 745  Q
    |||||||||||||||||||| || | ||||||||||||||||    
T  24037282 tcctcttcccaccgaaagccgatcataaggtttgggaaggtt 24037323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 287; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 481 - 866
Target Start/End: Original strand, 27513835 - 27514218
Alignment:
Q  481 tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt 580  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  27513835 tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt 27513932  T
Q  581 tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttcttcgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtc 680  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||  ||| | ||||    
T  27513933 tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcattctggtcttcgtc 27514032  T
Q  681 tctgttctggttttttctgcggctcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacggaatttgaaaaatcaga 780  Q
    ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27514033 tcctttctggttttttctgcggttcctcttcccaccgaaagccaattagaaggtttgggaaggtttcacaatttgaacagacagaatttgaaaaatcaga 27514132  T
Q  781 gaagaaagggaagaagattggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggaga 866  Q
    ||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514133 gaacaaagagaagaagatcggatggtggcaaggagaaggaggtgagggaaaggacgataaagaaggggaaaacagtgtgagggaga 27514218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 27510545 - 27510799
Alignment:
Q  8 gtatgaatggattaacgtaagcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatatt 107  Q
    ||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27510545 gtatgaaggaatttacgtacgcatgagcactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgtatatt 27510644  T
Q  108 cctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtc 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||    
T  27510645 cctaacttcaaacagaaaaaggtgtcgattttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt-aaaaatgtccaaccgtc 27510743  T
Q  207 ggtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 262  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27510744 agtaaaatagactttctcgttcctctttttgacagccacctcaaactcattcttgt 27510799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 8e-85
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 27513624 - 27513807
Alignment:
Q  288 aatatatattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcag 387  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27513624 aatatatattctacactcacatcattgaaatctaatctattcatattcaaattagttcaaaacactcaaaattcaaaaaactcaacctcttcatcatcag 27513723  T
Q  388 gcttgcagatagtttcaccaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacaacaacacagaaat 471  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27513724 gcttgcaggtagtttcatcaacttcccttgtattttcaaggtcttcggcaccttcttctctggaagctacgacaacacagaaat 27513807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 329 - 471
Target Start/End: Complemental strand, 8675245 - 8675102
Alignment:
Q  329 catattcaaattagttcaaaacaatcaaaattcaaaaaactcaacctcttcatcatcaggcttgcagatagtttcaccaacttcccttgtattttcaa-g 427  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||| ||||      
T  8675245 catattgaaattaggtcaaaacaatcaaaatttaaaaaactcaacctcttcatcatcaggcttgcaaacagtctcatcaacttcccttgtattctcaatc 8675146  T
Q  428 gtcttcggcaccttcttctctggaagctacaacaacacagaaat 471  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctccggaggctacaacaacacagaaat 8675102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 505 - 651
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
Q  505 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 600  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||| ||||| | || |||||| |||     ||    
T  8675040 gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga 8674941  T
Q  601 gtttagcatgaatttcagatcgtttttcttcgttcttactcatcgaaggac 651  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  8674940 gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac 8674890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 9461298 - 9461134
Alignment:
Q  317 atctaatctattcatattcaaattagttcaaaacaatcaaaattca---------aaaaactcaacctcttcatcatcaggcttgcagatagtttcacca 407  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||| ||    
T  9461298 atctaatctaatcatattcaaattaggtcaaaacaatcaaaattaacaaaaaaaaaaaaactcaacctcttcatcatcaggcttgcagatagtttcatca 9461199  T
Q  408 acttcccttgtattttcaa-ggtcttcggcaccttcttctctggaagctacaacaacacagaaat 471  Q
    |||||| |  |||||||||   |||||  ||||||||| |  ||||||| |||||||||| ||||    
T  9461198 acttccttcttattttcaataatcttcaacaccttcttattcggaagctgcaacaacacaaaaat 9461134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 704 - 745
Target Start/End: Complemental strand, 9461012 - 9460971
Alignment:
Q  704 tcctcttcccaccgaaagccaattagaaggtttgggaaggtt 745  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  9461012 tcctgttcccaccgaaagccaatcagaaggtttgggaaggtt 9460971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 298 - 410
Target Start/End: Original strand, 38950770 - 38950885
Alignment:
Q  298 ctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt------caaaaaactcaacctcttcatcatcaggctt 391  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||       ||||||||||||||||   |||||||||||    
T  38950770 ctacactcacaactttgaaatctaatctaatcatattcaaattaggtcaaaacaatcaaaattaaaaaaaaaaaaactcaacctct---tcatcaggctt 38950866  T
Q  392 gcagatagtttcaccaact 410  Q
    ||||||||||||| |||||    
T  38950867 gcagatagtttcatcaact 38950885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
Q  131 gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa 172  Q
    ||||||||||||||||||||||| |||||| |||| ||||||    
T  27592805 gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa 27592764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 18331878 - 18331945
Alignment:
Q  293 atattctacactcacaacattggaatctaatctattcatattcaaattagttcaaaacaatcaaaatt 360  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||||||||    
T  18331878 atattctacactcacaatattgaaatctaatctaatcatattcaaattatgtcaaaacaatcaaaatt 18331945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 18331979 - 18332031
Alignment:
Q  362 aaaaaactcaacctcttcatcatcaggcttgcagatagtttcaccaacttccc 414  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  18331979 aaaaaactcaacctcttcatcatcaggcttgtagatagtttcatcaacttccc 18332031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
Q  121 agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact 219  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||  | |  ||||||||| |||| | | |||||| ||   |||||| |||    
T  42091774 agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact 42091872  T
Q  220 ttctcgttcctctttttgacagccacctcaaactcattct 259  Q
    ||| ||||||||||||  ||||| ||||||| ||||||||    
T  42091873 ttcccgttcctcttttccacagctacctcaatctcattct 42091912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
Q  78 aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga 177  Q
    |||||||||||| | | ||||||||| ||| || ||  | | ||||||||| ||||||||||||||||| |  |||||||||| |||| ||||||  | |    
T  31949368 aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca 31949269  T
Q  178 -taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt 236  Q
     ||||  ||||| |||||||||||||| || |||||||| ||  || ||||| |||||||    
T  31949268 ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt 31949210  T

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