View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387-Insertion-5 (Length: 850)
Name: NF4387-Insertion-5
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 803; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 40 - 850
Target Start/End: Original strand, 42722766 - 42723576
Alignment:
| Q |
40 |
aaatgacttccatgcatctttgtgatgcttaaatacatgtaattcctaatacattatacttgcatgtatgaattccaaatccaaacaacttgtgccttcg |
139 |
Q |
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| T |
42722766 |
aaatgacttccatgcatctttgtgatgcttaaatacatgtaattcctaatacattatacttgcatgtatgaattccaaatccaaacaacttgtgcctttg |
42722865 |
T |
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| Q |
140 |
acaaattgttttgataatttgttatttcatttcagtgtagtgataagctgggtttaagccttgaactaggttcatttgctgcgggagtgatgatatcaac |
239 |
Q |
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| T |
42722866 |
acaaattgttttgataatttgttatttcatttcagtgtagtgataagctgggtttaagccttgaactaggttcatttgctgcgggagtgatgatatcaac |
42722965 |
T |
|
| Q |
240 |
aacagatcttggtcaacatacgcttgaacaagtaacacattttccttgggatatatattatttgtagttgctagttttactttatatgaacaagcgtatt |
339 |
Q |
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| T |
42722966 |
aacagatcttggtcaacatacgcttgaacaagtaacacattttccttaggatatatattatttgtagttgctagttttactttatatgaacaagcgtatt |
42723065 |
T |
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| Q |
340 |
ttaaggggaggggaatgtttgaatattcttttaggtattacttcatatttttatcatgaatgcctgtaaagtggggtggccaaccaaaatgaatttcagg |
439 |
Q |
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| T |
42723066 |
ttaaggggaggggaatgtttgaatattcttttaggtattacttcatatttttatcatgaatgcctgtaaagtggggtggccaaccaaaatgaatttcagg |
42723165 |
T |
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| Q |
440 |
gatccttcttgaaggaaatacattttgagatgaatccatgttttgccaatacttatttgagctttactcaaattttatgattttaggttgagccaattcg |
539 |
Q |
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| T |
42723166 |
gatccttcttgaaggaaatacattttgagatgaatccatgttttgccaatacttatttgagctttactcaaattttatgattttaggttgagccaattcg |
42723265 |
T |
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| Q |
540 |
caacttttttgctgctctgttcttagccagtattgggatgcttatacatgtccatttcctttggaatcatgttgacattttactggcagctgttatattg |
639 |
Q |
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| T |
42723266 |
caacttttttgctgctctgttcttagccagtattgggatgcttatacatgtccatttcctttggaatcatgttgacattttactggcagctgttatattg |
42723365 |
T |
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| Q |
640 |
gtgatcattgtaaaaacaatcgtagctgcatctgttgttaaggggtttggatacaacaacaagacgtccattcttgtaagatttgacaacagtcaatact |
739 |
Q |
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| T |
42723366 |
gtgatcattgtaaaaacaatcgtagctgcatctgttgttaaggggtttggatacaacaacaagacgtccattcttgtaagatttgacaacagtcaatact |
42723465 |
T |
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| Q |
740 |
gttacatctgcttttttattacatcatacatttcattgacagaggagccttaggttattccacatgcgtaggttgggatgtccttggcacaaattgggga |
839 |
Q |
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| T |
42723466 |
gttacatctgcttttttattacatcatacatttcattgacagaggagccttaggttattccacatgcgtaggttgggatgtccttggcacaaattgggga |
42723565 |
T |
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| Q |
840 |
atttgcctttg |
850 |
Q |
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| T |
42723566 |
atttgcctttg |
42723576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 4384856 - 4384961
Alignment:
| Q |
169 |
tttcagtgtagtgataagctgggtttaagccttgaactaggttcatttgctgcgggagtgatgatatcaacaacagatcttggtcaacatacgcttgaac |
268 |
Q |
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| T |
4384856 |
tttcagtgtagcgataagctgggattaagtctagaactaggttcctttgctgctggagtgatgattgcaaccactgatctggctccacatacactagaac |
4384955 |
T |
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| Q |
269 |
aagtaa |
274 |
Q |
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| T |
4384956 |
aagtaa |
4384961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 641
Target Start/End: Complemental strand, 49992 - 49886
Alignment:
| Q |
535 |
attcgcaacttttttgctgctctgttcttagccagtattgggatgcttatacatgtccatttcctttggaatcatgttgacattttactggcagctgtta |
634 |
Q |
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| T |
49992 |
attcgtaacctttttgcagctctcttcctctcaagtattggaatgcttatacatgtgcagttcctttggaaccatgtggatatcttgcttgcatctgtta |
49893 |
T |
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| Q |
635 |
tattggt |
641 |
Q |
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| T |
49892 |
ttttggt |
49886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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