View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387-Insertion-6 (Length: 598)
Name: NF4387-Insertion-6
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 577; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 7 - 591
Target Start/End: Complemental strand, 8777466 - 8776882
Alignment:
| Q |
7 |
aataacttttactagatctgcacaattacgaaacaaatatatgatagaggcctgaaatcagattgagcatcgaaagagttgagctataataagaatagaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8777466 |
aataacttttactagatctgcacaattacgaaacaaatatttgatagaggcctgaaatcagattgagcatcgaaagagttgagctataataagaatagaa |
8777367 |
T |
|
| Q |
107 |
gttgaaaatccaaaagaagtataagctaccaaaaagcttgcacaaaccaaccacacattagaatatagactgaaatgatgttctcagcaaaatctaacac |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8777366 |
gttgaaaatccaaaagaagtataagctaccaaaaagcttgcacaaaccaaccacacattagaatatagactgaaatgatgttctcagcaaaatctaacac |
8777267 |
T |
|
| Q |
207 |
aaatatagtgatgattagaaatcattacttgtcggtcacagaatgagcccgtgattaataggtatcatgatctagctcgactacagagaaatcaaagaat |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8777266 |
aaatatagtgatgattagaaatcattacttgtcggtcacagaatgagcccgtgattaataggtatcatgatctagctcgactacagagaaatcaaagaat |
8777167 |
T |
|
| Q |
307 |
ccgtgattaatgttatttattaagttcaataacaaattaactcataagttcatgagcaaattacatttattcatgaagctcaaaattacttttgacacat |
406 |
Q |
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| T |
8777166 |
ccgtgattaatgttatttattaagttcaataacaaattaactcataagttcatgagcaaattacatttattcatgaagctcaaaattacttttgacacat |
8777067 |
T |
|
| Q |
407 |
tgttttggaaatgacactgacaaacaactatcacaaagtagaaaatatatgtcaatacaagatagttttaaggtttcatgacatgaaagatgaagtgtat |
506 |
Q |
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| T |
8777066 |
tgttttggaaatgacactgacaaacaactatcacaaagtagaaaatatatgtcaatacaagatagttttaaggtttcatgacatgaaagatgaagtgtat |
8776967 |
T |
|
| Q |
507 |
aaccttctcttctctaaaatcttataattcaactaagttttcgttggtccacccaacacatcaagtgagagttttgcaatggtag |
591 |
Q |
| |
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| T |
8776966 |
aaccttctcttctctaaaagcttataattcaactaagttttcgttggtccacccaacacatcaagtgagagttttgcaatggtag |
8776882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 8789552 - 8789154
Alignment:
| Q |
19 |
tagatctgcacaattacgaaacaaatatatgatagaggcctgaaatcagattgagcatcgaaagagttgagctataataagaatagaagttgaaaatcca |
118 |
Q |
| |
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|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
8789552 |
tagatctgcacaattatgaaacaaatatttgttagaggcctgaaatcagattgagaatagaaagagttgaacgataataagaatagaagttgaaaatcca |
8789453 |
T |
|
| Q |
119 |
aaagaagtataagctaccaaaaagcttgcacaaaccaaccacacattagaatatagactgaaatgatgttc--tcagcaaaatctaacacaaatatagtg |
216 |
Q |
| |
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| || |||||||||||| ||||||||||| |||||| |||||||||||||| ||||| |||||| ||||||||||||||| || ||| || |
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| T |
8789452 |
a------tagaagctaccaaaatacttgcacaaacagaccacaaattagaatatagacagaaattatgttctttcagcaaaatctaaccacaacataatg |
8789359 |
T |
|
| Q |
217 |
atgattagaaatcattacttgtcggtcacagaatgagcccgtgattaataggtatcatgatctagctcgactacagagaaatcaaaga---atccgtgat |
313 |
Q |
| |
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||||||| |||| | || | ||| ||| ||||||| |||| | |||| ||||| ||||| || || ||||||| |||||| ||||| || | | |
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| T |
8789358 |
atgattaaaaattagtattagtcagtcgcagaatgtgcccatacttaaaaggtaccatgaaataccttgactacacagaaataaaagattgatatacggt |
8789259 |
T |
|
| Q |
314 |
taatgttatttattaagttc-aataacaaattaactcataagttcatgagcaaattacatttattcatgaagctcaaaattacttttgacacattgtttt |
412 |
Q |
| |
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|| ||| || ||||| | || ||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||| | |||||||||||||| |
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| T |
8789258 |
tattgtcatatattaggctcaaataataaattaactcataagttcatgagtaaattacatttattcatgaggctctacattac-tctgacacattgtttt |
8789160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 8783501 - 8783110
Alignment:
| Q |
19 |
tagatctgcacaattacg----aaacaaatatatgatagaggcctgaaatcagattgagcatcgaaagagttgagctataataagaatagaagttgaaaa |
114 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
8783501 |
tagatctgcacaattacatacaaaacaaatatttgatagaggccagtaatcagattgagcatagaaagagttgagcaataatgagaatagaagttgaaaa |
8783402 |
T |
|
| Q |
115 |
tccaaaagaagtataagctaccaaaaagcttgcacaaaccaaccacacattagaatatagactgaaatgatgttc--tcagcaaaatctaacacaaatat |
212 |
Q |
| |
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||||| || ||| ||||||||| ||||||||||| ||||||| |||| ||||||||| ||||||| |||| ||| ||||||||||| |||||| |
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| T |
8783401 |
tccaa------tagaagataccaaaaaacttgcacaaactaaccacaaattataatatagacagaaatgacgttctttcaacaaaatctaaccaaaatat |
8783308 |
T |
|
| Q |
213 |
agtgatgattagaaatcattacttgtcggtcacagaatgagcccgtgattaataggtatcatgatctagctcgactacagagaaatcaaagaat-ccgtg |
311 |
Q |
| |
|
|||| ||||||| ||||| |||| ||| ||| |||||||| ||||| |||| ||||| ||| |||||||||||| ||||||| | | | |
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| T |
8783307 |
agtggtgattagtaatcagtactagtcagtcgtagaatgagtccgtgcttaaaaggtagcat----------gactacagagaattcaaagattgctata |
8783218 |
T |
|
| Q |
312 |
attaat--gttatttattaagttcaataacaaattaactcataagttcatgagcaaattacatttattcatgaagctcaaaattacttttgacacattgt |
409 |
Q |
| |
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|| | || || ||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| || |||| | ||||| | |||| |||||| |
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| T |
8783217 |
cctagtcagtcatgtattaagctcaataataaattaactcataagttcatgagcaaactacatttattcacgaggctctacattac-tctgacgcattgt |
8783119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 492 - 580
Target Start/End: Complemental strand, 8782965 - 8782876
Alignment:
| Q |
492 |
aaagatgaagtgtataaccttctcttc-tctaaaatcttataattcaactaagttttcgttggtccacccaacacatcaagtgagagttt |
580 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
8782965 |
aaagatgaagtgtataaccttctcttaatcttaaatcatataattcaactatgttttggttggtccacccaacacatcaagtgagggttt |
8782876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 569
Target Start/End: Complemental strand, 8789047 - 8788936
Alignment:
| Q |
458 |
tcaatacaagatagttttaaggtttcatgacatgaaagatgaagtgtataaccttctcttc-tctaaaatcttataattcaactaagttttcgttggtcc |
556 |
Q |
| |
|
||||||| ||||||||| | | ||| || ||| ||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||| |||||||| |
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|
| T |
8789047 |
tcaatacgagatagtttcatgtttt-ataacaagaaagatgaagtgtataaccttctcttaatcacaaatcatataattcaactatgttttggttggtcc |
8788949 |
T |
|
| Q |
557 |
acccaacacatca |
569 |
Q |
| |
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||||||||||||| |
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|
| T |
8788948 |
acccaacacatca |
8788936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 158 - 415
Target Start/End: Original strand, 2540491 - 2540734
Alignment:
| Q |
158 |
cacacattagaatatagactgaaatgatgttct--cagcaaaatctaacacaaatatagtgatgattagaaatcattacttgtcggtcacagaatgagcc |
255 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||||| || | ||| ||||||||||||||| |
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|
| T |
2540491 |
cacaaattagaatatagactgaaatgatgttctttcagcaaaatctaaaccaaacatactgatgattagaaatcagtagtagtcagtcacagaatgagcc |
2540590 |
T |
|
| Q |
256 |
cgtgattaataggtatcatgatctagctcgactacagagaaatcaaagaatccgtgattaatgttatttattaagttcaataacaaattaactcataagt |
355 |
Q |
| |
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| ||||||| || ||| || ||||||||||||||| |||||||| || |||||| |||| ||||||||| |||||||||||||||| |
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| T |
2540591 |
catgattaaaagacatc---------cttgactacagagaaatc-aagaatcc---tctagtgttatatatt-agttcaatattaaattaactcataagt |
2540676 |
T |
|
| Q |
356 |
tcatgagcaaattacatttattcatgaagctcaaaattacttttgacacattgttttgga |
415 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| |
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|
| T |
2540677 |
tcatgagcaaattacatttatt--tgaggctctaaattactcttgacacattgttttgga |
2540734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 2540404 - 2540479
Alignment:
| Q |
6 |
caataacttttactagatctgcacaattacgaaacaaatatatgatagaggcctgaaatcagattgagcatcgaaa |
81 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| |
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|
| T |
2540404 |
caataacttttactagatctgcataattatgaaacaaatatttgatagaggccggaaatcagattgagcatagaaa |
2540479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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