View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4387_low_11 (Length: 239)

Name: NF4387_low_11
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4387_low_11
NF4387_low_11
[»] chr2 (19 HSPs)
chr2 (1-239)||(30038970-30039208)
chr2 (1-239)||(30108448-30108686)
chr2 (1-239)||(30233108-30233346)
chr2 (1-239)||(30021487-30021725)
chr2 (1-239)||(30079893-30080131)
chr2 (1-239)||(30120466-30120704)
chr2 (1-239)||(30135164-30135402)
chr2 (68-239)||(30056024-30056195)
chr2 (1-235)||(30250417-30250651)
chr2 (1-118)||(30278017-30278134)
chr2 (1-239)||(30066703-30066941)
chr2 (12-219)||(30788772-30788979)
chr2 (4-118)||(30169695-30169809)
chr2 (10-130)||(30222241-30222361)
chr2 (10-130)||(30090784-30090904)
chr2 (10-130)||(30127389-30127509)
chr2 (10-130)||(30028104-30028224)
chr2 (10-130)||(30101103-30101223)
chr2 (1-73)||(30010208-30010280)
[»] chr1 (1 HSPs)
chr1 (1-134)||(30272048-30272181)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30039208 - 30038970
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
30039208 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttttaattgtttagagagtgaagaactgaagttgct 30039109  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
30039108 attcttattaattggttcctttggactggattaccgctacactggaccaattttagtatgttattgggggttgggcttatttagacattctcacaaattg 30039009  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30039008 gcagatgcaagaatcagattcaacagattaataaatgac 30038970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30108686 - 30108448
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
30108686 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttttaattgtttagagagtgaagaactgaagttgct 30108587  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
30108586 attcttattaattggttcctttggactggattaccgctacactggaccaattttagtatgttattgggggttgggcttatttagacattctcacaaattg 30108487  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30108486 gcagatgcaagaatcagattcaacagattaataaatgac 30108448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30233346 - 30233108
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
30233346 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttttaattgtttagagagtgaagaactgaagttgct 30233247  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
30233246 attcttattaattggttcctttggactggattaccgctacactggaccaattttagtatgttattgggggttgggcttatttagacattctcacaaattg 30233147  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30233146 gcagatgcaagaatcagattcaacagattaataaatgac 30233108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30021487 - 30021725
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30021487 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 30021586  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||     
30021587 attcttattaattggttcctttggactggattacctctacactggaccacttttagtatgttattgggggttgggcttatttagacattctcacaaattt 30021686  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30021687 gcagatgcaagaatcagattcaacagattaataaatgac 30021725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30079893 - 30080131
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30079893 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 30079992  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||||    
30079993 attcttattaattggttcctttggactggattacctctacactggaccactttttgtatgttattgggggttgggcttatttacactttctcacaaattg 30080092  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30080093 gcagatgcaagaatcagattcaacagattaataaatgac 30080131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30120704 - 30120466
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30120704 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 30120605  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||     
30120604 attcttattaattggttcctttggactggattacctctacactggaccacttttagtatgttattgggggttgggcttatttagacattctcacaaattt 30120505  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30120504 gcagatgcaagaatcagattcaacagattaataaatgac 30120466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30135402 - 30135164
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30135402 atgaattacagagatttgatcaagaagggttgaataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 30135303  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||     
30135302 attcttattaattggttcctttggactggattacctctacactggaccacttttagtatgttattgggggttgggcttatttagacattctcacaaattt 30135203  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    |||||||||||||||||||||||||||||||||||||||    
30135202 gcagatgcaagaatcagattcaacagattaataaatgac 30135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 30056024 - 30056195
Alignment:
68 taattgtttagagagtgaagaactgaagttgctattcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
30056024 taattgtttagagagtgaagaactgaagttgctattcttattaattggttcctttggactggattaccgctacactggaccaatttttgtatgttattgg 30056123  T
168 gggttgggcttatttagacattctcacaaattggcagatgcaagaatcagattcaacagattaataaatgac 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30056124 gggttgggcttatttagacattctcacaaattggcagatgcaagaatcagattcaacagattaataaatgac 30056195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30250417 - 30250651
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
30250417 atgaattagaaagatttgatcaagaaggattgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaggaactgaagttgct 30250516  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
    |||||| || ||||||||||||||||| ||||||  ||||| |||||| || ||| ||| ||||| ||||||||||||||||||||| | ||||| ||||    
30250517 attcttgttcattggttcctttggactagattacatctacattggatcgatgtttttatattatttggggttgggcttatttagacactatcacacattg 30250616  T
201 gcagatgcaagaatcagattcaacagattaataaa 235  Q
     | |||||||||||||||||| ||| |||||||||    
30250617 acggatgcaagaatcagattctacaaattaataaa 30250651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30278017 - 30278134
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || |||||    
30278017 atgaattagagagatttgatgaagaagggttgcataagaaagtttactctactcttgaattgagttataattgtttagagaatgaggaactaaaattgct 30278116  T
101 attcttattaattggttc 118  Q
    ||||||||| ||||||||    
30278117 attcttattcattggttc 30278134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30066703 - 30066941
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||| ||| |||||||||||||||||||| ||||||||||| | || ||| || |||||||||||||||||||  |||| ||||| || || ||||  ||    
30066703 atgagttagagagatttgatcaagaagggctgcataagaaaatatattctgctttggaattgagttataattgcctagaaagtgatgagctaaagtcact 30066802  T
101 attcttattaattggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattg 200  Q
     |||||||| || ||||| |||||||| ||||||| | |||| |||  | | |||  | | ||||||||| ||||||||| |||||| ||||||| ||||    
30066803 gttcttattcataggttcgtttggactagattacctccacaccggagaactgttttcaagctattgggggatgggcttatatagacactctcacacattg 30066902  T
201 gcagatgcaagaatcagattcaacagattaataaatgac 239  Q
     |||||||||||| ||||| |  || |||||||||||||    
30066903 acagatgcaagaaccagatactgcaaattaataaatgac 30066941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 30788772 - 30788979
Alignment:
12 agatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttattaa 111  Q
    ||||||||| |||||||||||||||||||| | |||||| || | ||||||||||||||||| ||||| ||||| ||||| ||||  || |||||||| |    
30788772 agatttgataaagaagggttgcataagaaaatctactctgctttagaattgagttataattgcttagaaagtgatgaactaaagtcactgttcttattca 30788871  T
112 ttggttcctttggactggattaccgctacactggatcaatttttgtatgttattgggggttgggcttatttagacattctcacaaattggcagatgcaag 211  Q
    ||||||| ||||| || ||| ||| | |||||| |  | | ||| ||||||||||||||| |||||||| |||| | |||| || |||| ||||||| ||    
30788872 ttggttcatttggcctagatcacctccacactgcagaactatttttatgttattgggggtcgggcttatatagaaactctcccacattgacagatgcgag 30788971  T
212 aatcagat 219  Q
    || |||||    
30788972 aaccagat 30788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 30169695 - 30169809
Alignment:
4 aattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctatt 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| || |||||||  || ||    
30169695 aattagagagatttgatcaagaaggcttgcataagaaagtttactctaccttggaattgagttataattgtttagaaagtgatgacctgaagtcactctt 30169794  T
104 cttattaattggttc 118  Q
     ||||| ||||||||    
30169795 tttattcattggttc 30169809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 30222241 - 30222361
Alignment:
10 agagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttatt 109  Q
    |||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||||||||||| || || || |||||||  || ||| | ||    
30222241 agagatttgatcaacaaggtttgcataagaaagtctactctaccttggaattgagttataattgtttagaaagggatgacctgaagtcactcttcctttt 30222340  T
110 aattggttcctttggactgga 130  Q
    ||||||||| |||||||||||    
30222341 aattggttcatttggactgga 30222361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 30090784 - 30090904
Alignment:
10 agagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttatt 109  Q
    |||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||||||||||| || || || |||||||  || ||| | ||    
30090784 agagatttgatcaacaaggtttgcataagaaagtctactctaccttggaattgagttataattgtttagaaagggatgacctgaagtcactcttcctttt 30090883  T
110 aattggttcctttggactgga 130  Q
     |||||||| |||||| ||||    
30090884 cattggttcatttggattgga 30090904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 30127389 - 30127509
Alignment:
10 agagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttatt 109  Q
    |||||||||||||| |||| |||||||||||||| ||||||||  ||||||||||||||||||||||||| || || || |||||||  || ||| | ||    
30127389 agagatttgatcaacaaggtttgcataagaaagtctactctaccttggaattgagttataattgtttagaaagggatgacctgaagtcactcttcctttt 30127488  T
110 aattggttcctttggactgga 130  Q
     |||||||| |||||| ||||    
30127489 cattggttcatttggattgga 30127509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 30028104 - 30028224
Alignment:
10 agagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttatt 109  Q
    |||||||||||||| |||| ||||||| |||||| ||||||||  ||||| ||||||||||||||||||| || || || |||||||  || ||| | ||    
30028104 agagatttgatcaacaaggtttgcatatgaaagtctactctaccttggaactgagttataattgtttagaaagggatgacctgaagtcactcttcctttt 30028203  T
110 aattggttcctttggactgga 130  Q
     ||| |||| |||||||||||    
30028204 catttgttcatttggactgga 30028224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 30101103 - 30101223
Alignment:
10 agagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgctattcttatt 109  Q
    |||||||||||||| |||| ||||||| |||||| ||||||||  ||||| ||||||||||||||||||| || || || |||||||  || ||| | ||    
30101103 agagatttgatcaacaaggtttgcatatgaaagtctactctaccttggaactgagttataattgtttagaaagggatgacctgaagtcactcttcctttt 30101202  T
110 aattggttcctttggactgga 130  Q
     ||| |||| |||||||||||    
30101203 catttgttcatttggactgga 30101223  T

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Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30010208 - 30010280
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattg 73  Q
    |||| ||| |||||||||||||||||||| ||||||||||| | || ||| || |||||||||||||||||||    
30010208 atgagttagagagatttgatcaagaagggctgcataagaaaatatattctgctttggaattgagttataattg 30010280  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 30272048 - 30272181
Alignment:
1 atgaattacagagatttgatcaagaagggttgcataagaaagtttactctactctggaattgagttataattgtttagagagtgaagaactgaagttgct 100  Q
    |||| ||| |||||||||||||| ||||||||||||||||| | || |||||| ||||||||||||||||||| ||||| ||||| || || ||||  ||    
30272048 atgagttagagagatttgatcaaaaagggttgcataagaaaatctattctactttggaattgagttataattgcttagaaagtgacgagctaaagtcact 30272147  T
101 attcttattaattggttcctttggactggattac 134  Q
     |||||||| |||||||| ||||| || ||||||    
30272148 cttcttattcattggttcgtttggtctagattac 30272181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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