View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387_low_12 (Length: 236)
Name: NF4387_low_12
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27520333 - 27520113
Alignment:
| Q |
1 |
tttgtaatggtgttaaggagtgaaacaatgtgggacatggaagaggatgaatggcaaatggtagggaagaaaggaaaccaatttgtggtgaatagtcagc |
100 |
Q |
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| T |
27520333 |
tttgtaatggtgttaaggagtgcaacaatgtgggacatggaagaggatgaatggcaaatggtagggaagaaaggaaaccaatttgtggtgaatagtcagc |
27520234 |
T |
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| Q |
101 |
ctttctatataaatggattcaacgcatactggttgatgatgtttgcggcagatgactccaccagacgaaaagtcaccgaggttttcaaacaagcaacctc |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27520233 |
ctttctatataaatggattcaacgcatattggttgatgatgtttgcggcagatgactccaccagacgaaaagtcaccgaggttttcaaacaagcaacctc |
27520134 |
T |
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| Q |
201 |
actaggtatgacagtttgtag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27520133 |
actaggtatgacagtttgtag |
27520113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27498897 - 27498678
Alignment:
| Q |
1 |
tttgtaatggtgttaaggagtgaaacaatgtgggacatggaagaggatgaatggcaaatggtagggaagaaaggaaaccaatttgtggtgaatagtcagc |
100 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27498897 |
tttgtaatggtgtta-gaagtgaaacaatgtgggacatggaagaggatgaatggcaaatggtagggaagaaaggaaaccaatttgtggtgaatggtcagc |
27498799 |
T |
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| Q |
101 |
ctttctatataaatggattcaacgcatactggttgatgatgtttgcggcagatgactccaccagacgaaaagtcaccgaggttttcaaacaagcaacctc |
200 |
Q |
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| T |
27498798 |
ctttctatataaatggattcaacacatactggttaatgatgtttgctgcagatgactccaccagaggaaaagtcactgaggttttcaaacaagcatcctc |
27498699 |
T |
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| Q |
201 |
actaggtatgacagtttgtag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
27498698 |
actaggtatgacagtttgtag |
27498678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 281131 - 281285
Alignment:
| Q |
67 |
aagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatactggttgatgatgtttgcggcagatgactccaccagac |
166 |
Q |
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|||||||||||||||||||| |||||| || ||||||||| |||||||||||||| | || ||||||||| | ||||| || || || || || ||| |
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| T |
281131 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagag |
281230 |
T |
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| Q |
167 |
gaaaagtcaccgaggttttcaaacaagcaacctcactaggtatgacagtttgtag |
221 |
Q |
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||| ||||| |||| |||||||| ||| ||||| | || |||||||||||||| |
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| T |
281231 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtag |
281285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 634721 - 634567
Alignment:
| Q |
67 |
aagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatactggttgatgatgtttgcggcagatgactccaccagac |
166 |
Q |
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|||||||||||||||||||| |||||| || ||||||||| |||||||||||||| | || ||||||||| | ||||| || || || || || ||| |
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| T |
634721 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagag |
634622 |
T |
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| Q |
167 |
gaaaagtcaccgaggttttcaaacaagcaacctcactaggtatgacagtttgtag |
221 |
Q |
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||| ||||| |||| |||||||| ||| ||||| | || |||||||||||||| |
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| T |
634621 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtag |
634567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 820524 - 820370
Alignment:
| Q |
67 |
aagaaaggaaaccaatttgtggtgaatagtcagcctttctatataaatggattcaacgcatactggttgatgatgtttgcggcagatgactccaccagac |
166 |
Q |
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|||||||||||||||||||| |||||| || ||||||||| |||||||||||||| | || ||||||||| | ||||| || || || || || ||| |
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| T |
820524 |
aagaaaggaaaccaatttgtagtgaatgaccaacctttctatgtaaatggattcaacacttattggttgatggtatttgctgcggacgagtcgacaagag |
820425 |
T |
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| Q |
167 |
gaaaagtcaccgaggttttcaaacaagcaacctcactaggtatgacagtttgtag |
221 |
Q |
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||| ||||| |||| |||||||| ||| ||||| | || |||||||||||||| |
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| T |
820424 |
gaagggtcactcaggtgttcaaacatgcatcctcagttggcatgacagtttgtag |
820370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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