View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4387_low_13 (Length: 228)

Name: NF4387_low_13
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4387_low_13
NF4387_low_13
[»] chr6 (3 HSPs)
chr6 (1-228)||(13608152-13608378)
chr6 (112-175)||(33412747-33412810)
chr6 (112-175)||(33390902-33390965)
[»] chr8 (1 HSPs)
chr8 (1-228)||(6473270-6473502)
[»] chr4 (5 HSPs)
chr4 (16-221)||(31244142-31244350)
chr4 (108-176)||(31482036-31482104)
chr4 (112-165)||(31476204-31476257)
chr4 (142-175)||(31496174-31496207)
chr4 (139-175)||(31501341-31501377)
[»] chr5 (1 HSPs)
chr5 (29-90)||(17599893-17599954)
[»] chr7 (1 HSPs)
chr7 (29-90)||(14723896-14723957)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 13608152 - 13608378
Alignment:
Q  1 acagtgcaaactaactacatcatccttagcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttcatctaggagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608152 acagtgcaaactaactacatcatccttagcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttcatctaggagga 13608251  T
Q  101 tgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttggcgctcttcataaaaatgacattgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13608252 tgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttggcgctc-tcataaaaatgacattgt 13608350  T
Q  201 tgcattcggagatgatacaaacctaaaa 228  Q
    ||||||| ||||||||||||||||||||    
T  13608351 tgcattcagagatgatacaaacctaaaa 13608378  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 33412810 - 33412747
Alignment:
Q  112 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttg 175  Q
    |||||||||||||| | |||| | || |||||||| |||||||||||||||||| |||||||||    
T  33412810 tatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttg 33412747  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 33390965 - 33390902
Alignment:
Q  112 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttg 175  Q
    |||||||||||||| | |||||| || |||||||| ||||||||||||| ||||  ||||||||    
T  33390965 tatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttg 33390902  T

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Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 6473502 - 6473270
Alignment:
Q  1 acagtgcaaactaactacatcatccttagcaagttagttttgg--------cttttacaatttcaatggctagtagtagcatccaaactgtctcttcatc 92  Q
    ||||||||||| || ||||  ||||||||||||||||||||||        |||| ||||||| |||| || ||||||||||||||| ||||||||||      
T  6473502 acagtgcaaacaaaatacaaaatccttagcaagttagttttgggcctttggctttaacaatttgaatgactcgtagtagcatccaaagtgtctcttcaaa 6473403  T
Q  93 taggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttggcgctcttcataaaaat 192  Q
    ||||||||   |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6473402 taggagga---aatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactgatcatctttttggtgctcttcataaaaat 6473306  T
Q  193 gacattgttgcattcggagatgatacaaacctaaaa 228  Q
      ||||||||  ||| | ||||||| ||||||||||    
T  6473305 cgcattgttgtcttcagggatgatataaacctaaaa 6473270  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 31244142 - 31244350
Alignment:
Q  16 tacatcatccttagcaagttagttttggcttttacaatttcaatg------gctagtagtagcatccaaactgtctcttcatctaggaggatgaaatgga 109  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||      ||| ||| |||||||| || | |||||||| ||| ||   |||||||||    
T  31244142 tacatcatcctcagcaagttagttttggcttttacaattgcaatgacaatggcttgtaatagcatccgaagtatctcttcacctaaga---tgaaatgga 31244238  T
Q  110 aatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttggcgctcttcataaaaatgacattgttgcattcgg 209  Q
    ||||||||||||||||||||||  | || |  ||||| |||||||||||||||||||| ||||||||| |||| |||||||| | ||||||| | ||| |    
T  31244239 aatatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgatcacctttttggcactctccataaaaaaggcattgttaccttcag 31244338  T
Q  210 agatgatacaaa 221  Q
     |||||||||||    
T  31244339 ggatgatacaaa 31244350  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 31482036 - 31482104
Alignment:
Q  108 gaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttgg 176  Q
    ||||||||| ||||||||||| ||| |||| || ||||| || ||||| ||||||||||||||||||||    
T  31482036 gaaatatgacgtgtttgtgagtttctgtggtgatgacacacgtaacaaattcactgatcatctttttgg 31482104  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 31476204 - 31476257
Alignment:
Q  112 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgat 165  Q
    ||||| ||||||||||||||| | || ||||| || ||||||||||||||||||    
T  31476204 tatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgat 31476257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 31496174 - 31496207
Alignment:
Q  142 gacacgcgcaacaatttcactgatcatctttttg 175  Q
    ||||| ||||||||||||||||||||||||||||    
T  31496174 gacactcgcaacaatttcactgatcatctttttg 31496207  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 31501341 - 31501377
Alignment:
Q  139 gaagacacgcgcaacaatttcactgatcatctttttg 175  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  31501341 gaagacactcgcaacaatttcacttatcatctttttg 31501377  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 17599954 - 17599893
Alignment:
Q  29 gcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttca 90  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  17599954 gcaagttagctttggcttttataatatcaatggctagtagtagcatccaaagtgtctcttca 17599893  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 14723896 - 14723957
Alignment:
Q  29 gcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttca 90  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  14723896 gcaagttagctttggcttttataatatcaatggctaatagtagcatccaaagtgtctcttca 14723957  T

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