View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4387_low_2 (Length: 532)

Name: NF4387_low_2
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4387_low_2
NF4387_low_2
[»] chr1 (12 HSPs)
chr1 (36-512)||(9085972-9086451)
chr1 (37-512)||(9125144-9125619)
chr1 (37-512)||(9069676-9070151)
chr1 (48-512)||(8861566-8862030)
chr1 (37-512)||(8978966-8979441)
chr1 (273-496)||(9106248-9106469)
chr1 (319-512)||(9337687-9337880)
chr1 (420-512)||(9236173-9236265)
chr1 (319-512)||(9364546-9364739)
chr1 (90-293)||(9420670-9420873)
chr1 (90-293)||(9437753-9437956)
chr1 (436-512)||(9377984-9378060)


Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 36 - 512
Target Start/End: Complemental strand, 9086451 - 9085972
Alignment:
36 aattctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattt 135  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9086451 aattctcaacaatacacagggagaaggtaaagagttcatcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattt 9086352  T
136 tgcgcagag----ggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttc 231  Q
    |||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
9086351 tgcgcagagctagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatattttcacctgataacacggatcacttc 9086252  T
232 atggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacatta 331  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9086251 atggggtgggagaagctgca-caaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacatta 9086153  T
332 aacctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgac 431  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9086152 accctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgac 9086053  T
432 agctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
9086052 agctgctaggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatat 9085972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 37 - 512
Target Start/End: Complemental strand, 9125619 - 9125144
Alignment:
37 attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt 136  Q
    |||||||||||||||||||||||||||| ||||||  |||| ||||| ||||||||||| | ||| ||||| || ||||||||||| |||||||| |  |    
9125619 attctcaacaatacacagggagaagggatagagtttatcacagaagtggaaattatgggtacaatccaccacattaacgtggttcgcttgcttggctact 9125520  T
137 gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg 236  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||| |||||||||| ||||||||    
9125519 gcgcagatggaatccatcgagctcttgtatacaatttgtttccaaaaggttcgctacaatgcttcatatttccaccggatgacaaggatcatttcatggg 9125420  T
237 gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct 336  Q
    |||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| || |||    
9125419 gtgggagaagctacaactaattagtcttggtgtagcaaaaggaattgagtatcttcatgagggttgtagccatccaattcttcactttgacatcaaccct 9125320  T
337 cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg 436  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||| || |    
9125319 cacaatgttttgctagatgacaccttcactccaaaaatttcagactttggactcgccaaattatgttcaaagaatgttagtgttgtatccatgactgcgg 9125220  T
437 ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
9125219 ctagaggaaccttgggatatatggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatat 9125144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 37 - 512
Target Start/End: Complemental strand, 9070151 - 9069676
Alignment:
37 attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt 136  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||    
9070151 attctcaacaatacacaaggagaagggaaagagttcatcactgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttggctttt 9070052  T
137 gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg 236  Q
    ||||||| ||| | ||  | ||||| ||||||||||| ||| | |||||||| || ||||||||||||||||| || |||||||||||| | ||||||||    
9070051 gcgcagaaggagttcactgcgctctagtatacaattttttttcgaaaggttctctgcaaagcttcatatttccaccggataacaaggattatttcatggg 9069952  T
237 gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct 336  Q
    |||||||||||| ||||||||||||  |||||| ||||||| ||||||||||||||||||||| ||||||||||||||  | ||||||||||| || |||    
9069951 gtgggagaagctacaacaaattagtactggtatagcaaaagcaatcgagtatcttcatgagggctgtagccatccaattattcactttgacatcaaccct 9069852  T
337 cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg 436  Q
    | |||||||||| |||||||  ||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||    
9069851 cgcaatgttttgttagatgattccttcactccaaaaatttctgactttgggctcgccaaattatgtgccaagaatcttagtatagtgtccatgacagctg 9069752  T
437 ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    |||| |||||||||||||||||||| || |||||  |||| |||||||||||||||||||||||||||||||||||    
9069751 ctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatat 9069676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 48 - 512
Target Start/End: Complemental strand, 8862030 - 8861566
Alignment:
48 tacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagaggga 147  Q
    |||| |||||||||||||||||||| ||| |||||| | ||||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| |||    
8862030 tacagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga 8861931  T
148 atccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagc 247  Q
    || || || |||||||| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||||| || |||||||||||||||||||    
8861930 attcaccgcgctcttgtctacaatttatttccaaatggttcgctacaaagcttcatatttccaccagataacaaggaccatttcatggggtgggagaagc 8861831  T
248 tgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgtttt 347  Q
    | ||||||||| || | || || || |||||||| |||||||| |||   ||||||| |||||||||  | ||||| ||||| || ||||||||||||||    
8861830 tacaacaaattggtataggaattgccaaaggaattgagtatctacatctcggttgtaaccatccaataattcacttcgacatcaaccctcacaatgtttt 8861731  T
348 gctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctagaggaacc 447  Q
    |||||||||| |||| || ||||||||||| || ||||| |||||||||||||||||||||||| |||| || |||||||||||||||||||  ||||||    
8861730 gctagatgaatcctttacgccaaaaatttcggattttggtctcgccaaattatgttccaagaatcttagcgttgtgtccatgacagctgctaagggaacc 8861631  T
448 ttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    |||||||| ||||||||||||||| | ||| |||||||||| ||||| ||||||||||| |||||    
8861630 ttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatat 8861566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 512
Target Start/End: Complemental strand, 8979441 - 8978966
Alignment:
37 attctcaacaatacacagggagaagggaaagagttcgtcactgaagtagaaattatgggaaaaatacaccatatcaacgtggttcggttgcttggatttt 136  Q
    ||||||||||||||| | ||||| |||||||||||| | |  ||||| | ||||||||||||||| ||||| ||||| || ||||| |||||||| || |    
8979441 attctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttct 8979342  T
137 gcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttcactacaaagcttcatatttccgcctgataacaaggatcacttcatggg 236  Q
    | ||||||||||| ||||||| |||||| |||||||| ||| |||| |||||  ||||||| ||||||||||| || |||||| |||| |||||||||||    
8979341 gtgcagagggaattcatcgtgttcttgtctacaatttattttcaaagggttcgttacaaagtttcatatttcctccagataacgaggaccacttcatggg 8979242  T
237 gtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacct 336  Q
    |||||||| ||||||  ||||| || |||| || || | |||||| |||||||||||| |||||||||| ||| ||||||| || |||||||| || |||    
8979241 gtgggagatgctgcagaaaattggtattggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccct 8979142  T
337 cacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctg 436  Q
    |||||||||||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||||| ||||  ||||||||||||||||||||| |    
8979141 cacaatgttttgctcgatgacacattaactccaaaaatttcagattttggtctcgccaaattatgttccatgaattgtagtgtagtgtccatgacagcgg 8979042  T
437 ctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    |||| || ||||||||||||||||| ||||||||| ||||| |||||||||| ||||| |||||||| ||||||||    
8979041 ctaggggtaccttgggatatatggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatat 8978966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 273 - 496
Target Start/End: Complemental strand, 9106469 - 9106248
Alignment:
273 aaaaggaatcgagtatcttcatgagggttgtagccatccaatcctgcactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaa 372  Q
    ||||||||| ||||||||||| || | ||||| ||||||||| || ||||||||||| || |||||||||||||||| |||||| |  ||||| ||||||    
9106469 aaaaggaattgagtatcttcacgaagattgtatccatccaattcttcactttgacatcaaccctcacaatgttttgcaagatgacaaattcacgccaaaa 9106370  T
373 atttcagactttggactcgccaaattatgttccaagaatattagtgtagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttt 472  Q
     ||||||| |||||  | |||||||| ||||| || ||   | || | |||||||| || | |||||||| ||||||||||||||||||||| ||||  |    
9106369 gtttcagattttggttttgccaaattttgttctaataaccattgtttggtgtccattaccgatgctagagaaaccttgggatatatggcgccagaag--t 9106272  T
473 tgtcacgaaattttggaaatgttt 496  Q
    |||||| |||||||||||||||||    
9106271 tgtcacaaaattttggaaatgttt 9106248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 512
Target Start/End: Original strand, 9337687 - 9337880
Alignment:
319 cactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtg 418  Q
    ||||||||||| || ||||| ||||| ||| ||||||| |  |||||||| |||||| |||| |||||  | |||||  ||||||| || |||   ||||    
9337687 cactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagtg 9337786  T
419 tagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    | || |||||||| || ||||  ||||| || || || ||||| ||||||||||| ||| |||| ||||| ||||| |||  ||||||||||||    
9337787 tcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatat 9337880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 512
Target Start/End: Complemental strand, 9236265 - 9236173
Alignment:
420 agtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    |||||| ||||| || || ||||||||||||||||| || || ||||||||||| ||  |||| || ||||||||||||  ||||||||||||    
9236265 agtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagtctgatat 9236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 512
Target Start/End: Original strand, 9364546 - 9364739
Alignment:
319 cactttgacattaaacctcacaatgttttgctagatgaaaccttcactccaaaaatttcagactttggactcgccaaattatgttccaagaatattagtg 418  Q
    ||||||||||| || ||||| ||||| ||| ||||||| |  |||||||| |||||| |||| |||||  | |||||  ||||||| || |||   |||     
9364546 cactttgacatcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagta 9364645  T
419 tagtgtccatgacagctgctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    | || |||||||| || ||||  ||||| || || || ||||| ||||||||||| ||| |||| ||||| ||||| |||  ||||||||||||    
9364646 tcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagtctgatat 9364739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 293
Target Start/End: Complemental strand, 9420873 - 9420670
Alignment:
90 tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca 189  Q
    |||||||||||| || || ||||| || ||||| ||| ||||||||||||| || |||  | | ||||||||||| || ||||| |||||||| |||||     
9420873 tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg 9420774  T
190 ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc 289  Q
     |||| | |||||||   |  |||||| | | ||| || ||  | || ||||||||||| |||||||||  |||||| || || ||||| || |||||||    
9420773 ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc 9420674  T
290 ttca 293  Q
    ||||    
9420673 ttca 9420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 293
Target Start/End: Complemental strand, 9437956 - 9437753
Alignment:
90 tatgggaaaaatacaccatatcaacgtggttcggttgcttggattttgcgcagagggaatccatcgtgctcttgtatacaatttgtttccaaaaggttca 189  Q
    |||||||||||| || || ||||| || ||||| ||| ||||||||||||| || |||  | | ||||||||||| || ||||| |||||||| |||||     
9437956 tatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttcg 9437857  T
190 ctacaaagcttcatatttccgcctgataacaaggatcacttcatggggtgggagaagctgcaacaaattagtcttggtatcgcaaaaggaatcgagtatc 289  Q
     |||| | |||||||   |  |||||| | | ||| || ||  | || ||||||||||| |||||||||  |||||| || || ||||| || |||||||    
9437856 ttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatc 9437757  T
290 ttca 293  Q
    ||||    
9437756 ttca 9437753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 512
Target Start/End: Original strand, 9377984 - 9378060
Alignment:
436 gctagaggaaccttgggatatatggcgcctgaagttttgtcacgaaattttggaaatgtttctcttaagtctgatat 512  Q
    ||||||||||| ||||| || || || ||||||||||| ||| |||| || ||||||||||||   |||||||||||    
9377984 gctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaaatgtttcttacaagtctgatat 9378060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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