View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387_low_4 (Length: 479)
Name: NF4387_low_4
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 45523227 - 45522762
Alignment:
| Q |
1 |
tattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgtcgatgcaatacagtattgtcaagatgagtaagtctccttactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523227 |
tattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgtcgatgcaatacagtattgtcaagatgagtaagtctccttactt |
45523128 |
T |
|
| Q |
101 |
ggtagtatatgggtcttctaaagtttgccaacatttttgttgcgtcactggttgtaccattttagacagtatgtaaatagaatcatagaattattatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523127 |
ggtagtatatgggtcttctaaagtttgccaacatttttgttgcgtcactggttgtaccattttagacagtatgtaaatagaatcatagaattattatcaa |
45523028 |
T |
|
| Q |
201 |
tcatatcatagaattgttaacagcttatgattgctgataatttggctgctttgctgtctccaaattgtagccattggattcttgtcatggtttgtagtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523027 |
tcatatcatagaattgttaacagcttatgattgctgataatttggctgctttgctgtctccaaattgtagccattggattcttgtcatggtttgtagtgg |
45522928 |
T |
|
| Q |
301 |
tgttgttttgaatatgatccccacatatctgtgcataccatctagaaactgaaaactcaatatgttaatcttaagttactcttcatttagatattacaat |
400 |
Q |
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| T |
45522927 |
tgttgttttgaatatgatccccacatatctgtgcataccatctagaaactgaaaactcaatatgttaatcttaagttactcttcatttagatattacaat |
45522828 |
T |
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| Q |
401 |
gtacttataaattattgctttattgtagctctgcagggagttacctctttgtatcgcacacaggtt |
466 |
Q |
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| T |
45522827 |
gtacttataaattattgctttattgtagctctgcagggagttacctctttgtatcgcacacaggtt |
45522762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 38079771 - 38079860
Alignment:
| Q |
1 |
tattgtctatcggaggatacccttaacaagagagagagatgccttagcctctgatgtcgatgcaatacagtattgtcaagatgagtaagt |
90 |
Q |
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||||||||||||||||||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||| ||| ||||||||||||| |
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| T |
38079771 |
tattgtctatcggaggataccgttaacgagggagagagatgctttggcctctgatgttgatgcaatacagtgctgtaaagatgagtaagt |
38079860 |
T |
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