View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387_low_5 (Length: 405)
Name: NF4387_low_5
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 15890728 - 15890443
Alignment:
| Q |
1 |
ataaaagaggaggagagtgtaattaaagattctcttagaaaaagagagtgtaatttactcattttataataataatnnnnnnnntacatcctattttttg |
100 |
Q |
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| T |
15890728 |
ataaaaggggagggaagtgtaattaaagattctcttaggggaggagagtgtaatttactcattttataataataataaaaaaaatgcatcctattttttg |
15890629 |
T |
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| Q |
101 |
aggtgttcgaattgtatcatctaaattgatgtccaagacagagaaaactcattttcaattatataatccaaaaatttcatagacatttcataagatggaa |
200 |
Q |
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| T |
15890628 |
aggtgttcaaattgtatcatctaaattgatgtccaaaacagagaaaactcattttcaattatataatccaaaaatttcatggacatttcataagatggaa |
15890529 |
T |
|
| Q |
201 |
aaggaataagtccaataataaatccaactctcactcacacagtttccatgtagcttgtgtgtttcagttttatccacaaacttaggaact |
290 |
Q |
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| T |
15890528 |
aaggaataagtccaataacaaatccaactc----tcacacagtttccatgtagcttgtgtgtttcagttttatccacaaacttaggaact |
15890443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 322 - 391
Target Start/End: Complemental strand, 15890411 - 15890342
Alignment:
| Q |
322 |
catcatacaaaatcaatgtcagccaatcaagaaagaaaatactttctatcatcatctttggcacaaaact |
391 |
Q |
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| T |
15890411 |
catcatacaaaatcaatgtcagccaatcaagaaagaaaatactttctatcatcatctttggcacaaaact |
15890342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36449766 - 36449707
Alignment:
| Q |
1 |
ataaaagaggaggagagtgtaattaaagattctcttagaaaaagagagtgtaatttactc |
60 |
Q |
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| T |
36449766 |
ataaaagaaaaggggagtgtaattcaagcttctcttagagaaggagagtgtaatttactc |
36449707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 20115684 - 20115738
Alignment:
| Q |
15 |
gagtgtaattaaagattctcttagaaaaagagagtgtaatttactcattttataa |
69 |
Q |
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|||||||||| ||| |||||||||| |||| |||||||||||| ||| ||||||| |
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| T |
20115684 |
gagtgtaattcaagcttctcttagagaaagggagtgtaatttaatcaatttataa |
20115738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 20096853 - 20096905
Alignment:
| Q |
15 |
gagtgtaattaaagattctcttagaaaaagagagtgtaatttactcattttat |
67 |
Q |
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|||||||||| || |||||||||||||| |||||||||||||||| ||||| |
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| T |
20096853 |
gagtgtaattcaaacttctcttagaaaaatggagtgtaatttactcaatttat |
20096905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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