View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4387_low_6 (Length: 400)
Name: NF4387_low_6
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 27520366 - 27520746
Alignment:
| Q |
1 |
aacataccattggccacagttatttagagaaacctcgtacaaaa-aagttggtatggttggcttgtatatagtaatatataacagctagagggtgcatgc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520366 |
aacataccattggccacagttatttagagaaacctcgtacaaaaaaagttggtatggttggctagtatatagtaatatataacagctagagggtgcatgc |
27520465 |
T |
|
| Q |
100 |
ttgatcatacccataatttgtgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatn |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520466 |
ttgatcatacccataatttgtgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatc |
27520565 |
T |
|
| Q |
200 |
nnnnnnnnnnnnnnnnnnntaataggcattccc---attttcttcattgagattggttacttagccacaatataatgttcatgctctattagggcatgtt |
296 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520566 |
aaaaaaaggaataaaaaaataatacatattcccattattttcttcattgaaattggttacttagccacaatataatgttcatgctctattagggcatgtt |
27520665 |
T |
|
| Q |
297 |
attatatatctgaacatctgaagttatcttctgagttactaactttaaagttatatatctaactttaaagtgaagaaatttttatct |
383 |
Q |
| |
|
||||||||||||||||||| ||||||||| || | || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27520666 |
attatatatctgaacatcttaagttatct----ag--aaaaaacctaaagttatatatctaactttaaagtgaagaaatttttatct |
27520746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 27499235 - 27499541
Alignment:
| Q |
23 |
tttagagaaacctcgtacaaaaaagttggtat---ggttggcttgtatatagtaatatataacagctagagggtgcatgcttgatcatacccataatttg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27499235 |
tttaaagaaacctcgtacaaaaaagttcgtatattggttggctagtaaatagtaatatagaacagctagagggtgcatgcatgatcatacccataatttg |
27499334 |
T |
|
| Q |
120 |
tgataggtttatgtacatgatcttggccttccatttgtgcctcttcatccaccctactaaaagcattagaacttagaatnnnnnnnnnnnnnnnnnnnnt |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
27499335 |
tgataggtttatgtacatgatcttgtccttccttttgtgcctcttcatccaccctactaacagcattagaacttagaatcaaaagaaggaataaaaaaat |
27499434 |
T |
|
| Q |
220 |
aataggcattcccattttcttcattgagattggttacttagccacaatataatgttcatgctctattagggcatgttattatatatctgaacatctgaag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
27499435 |
aataggcattcccattttcttcattgagattggttacttagccacaatataatgtccatgctctattagggcatgttattaaatatctgaacattttaag |
27499534 |
T |
|
| Q |
320 |
ttatctt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
27499535 |
ttatctt |
27499541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 27514238 - 27514333
Alignment:
| Q |
233 |
attttcttcattgagattggttacttagccacaatata--atgttcatgctctattagggcatgttattatatatctgaacatctgaagttatctt |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
27514238 |
attttcttcattgaaattggttacttagccacaatatataatgtccatgctctattagggcatgttattatatatctgaacattttaagttatctt |
27514333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 27514161 - 27514200
Alignment:
| Q |
159 |
cctcttcatccaccctactaaaagcattagaacttagaat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27514161 |
cctcttcatccaccctactaaaagcattagaacttagaat |
27514200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University