View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387_low_7 (Length: 322)
Name: NF4387_low_7
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 27638737 - 27638435
Alignment:
| Q |
15 |
caagatatactct-aagaactatttgtttaatcggttttgatggtatatatata--catgtatgcctttgaccaccactaacaagtagtatnnnnnnnnt |
111 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
27638737 |
caagatatactcttaagaactatttgtttaatcggttttgttggtatatatatatacatgtatgcctttgaccaccactaacatgtagtatgaaaaaaac |
27638638 |
T |
|
| Q |
112 |
cactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccatg |
211 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27638637 |
cactccctactacgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaggttggttctgaaataatggccatg |
27638538 |
T |
|
| Q |
212 |
caaccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacagtatt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27638537 |
caaccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccacaatatt |
27638438 |
T |
|
| Q |
312 |
atc |
314 |
Q |
| |
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||| |
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| T |
27638437 |
atc |
27638435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 111 - 305
Target Start/End: Complemental strand, 37354822 - 37354628
Alignment:
| Q |
111 |
tcactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccat |
210 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||| ||||||||| |||| ||||| ||||||||| ||||||| |
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| T |
37354822 |
tcactccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccat |
37354724 |
T |
|
| Q |
211 |
gcaaccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccac |
305 |
Q |
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|||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37354723 |
gcaatcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagttacaacaacttcaacctccac |
37354628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 111 - 305
Target Start/End: Complemental strand, 37366796 - 37366602
Alignment:
| Q |
111 |
tcactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccat |
210 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||| ||||||||| |||| ||||| ||||||||| ||||||| |
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| T |
37366796 |
tcactccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccat |
37366698 |
T |
|
| Q |
211 |
gcaaccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagttacaacaacttcaacctccac |
305 |
Q |
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|||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37366697 |
gcaatcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagttacaacaacttcaacctccac |
37366602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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