View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4387_low_8 (Length: 265)
Name: NF4387_low_8
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4387_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13608889 - 13609115
Alignment:
| Q |
1 |
tatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaa |
100 |
Q |
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| T |
13608889 |
tatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaa |
13608988 |
T |
|
| Q |
101 |
attattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttc |
200 |
Q |
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| T |
13608989 |
attattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttc |
13609088 |
T |
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| Q |
201 |
tgaatttggactcagatgatgatgttc |
227 |
Q |
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| T |
13609089 |
tgaatttggactcagatgatgatgttc |
13609115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 31244857 - 31245064
Alignment:
| Q |
20 |
tttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaaattattaaaaagttaacat |
119 |
Q |
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| T |
31244857 |
tttttgtttggggttgttgtgtgatgatttggtatttctatcctctggtcttttaggccacaatatgcagagattggaaaaattattaaagaggtaacat |
31244956 |
T |
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| Q |
120 |
gcttattgggaaacaaaacttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttctgaatttggactcagatga |
219 |
Q |
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| T |
31244957 |
gcttattgagtcacaaatcttcaactttacctaacgatatagttgggatgcactcacgagtcgaagaattagaaaagcttttgattatggactcagatga |
31245056 |
T |
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| Q |
220 |
tgatgttc |
227 |
Q |
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|||||||| |
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| T |
31245057 |
tgatgttc |
31245064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 6472835 - 6472633
Alignment:
| Q |
1 |
tatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggccagaatatgcagagattggaaaa |
100 |
Q |
| |
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|||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||||| |||||||||| |||| || ||||||| ||||||| |||| |
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| T |
6472835 |
tatcaattaatctttgttatttatgttcgtggttttcatgtgatgatttggaatttctattctctggtcttttaggtcacaatatgcggagattgaaaaa |
6472736 |
T |
|
| Q |
101 |
attattaaaaagttaacatgcttattgggaaacaaaacttcaactttacctggcaatatagttgggatgcactcacgagtggaagaattagaaaaccttc |
200 |
Q |
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|||||||||||| ||| | ||||||||||||| || ||| ||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| ||| |
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| T |
6472735 |
attattaaaaaggtaagaagcttattgggaaataagactgaaactttaactggtgatatagttgggatgcactcacaagtggaagaattacaaaactttc |
6472636 |
T |
|
| Q |
201 |
tga |
203 |
Q |
| |
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||| |
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|
| T |
6472635 |
tga |
6472633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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