View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4387_low_9 (Length: 262)

Name: NF4387_low_9
Description: NF4387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4387_low_9
NF4387_low_9
[»] chr2 (19 HSPs)
chr2 (18-243)||(30185689-30185914)
chr2 (18-249)||(30056297-30056528)
chr2 (18-249)||(30120133-30120364)
chr2 (18-249)||(30134831-30135062)
chr2 (135-249)||(30021827-30021941)
chr2 (135-249)||(30038754-30038868)
chr2 (135-249)||(30080233-30080347)
chr2 (135-249)||(30108232-30108346)
chr2 (135-249)||(30232892-30233006)
chr2 (18-249)||(30789101-30789332)
chr2 (18-249)||(30250757-30250988)
chr2 (18-196)||(30067096-30067274)
chr2 (117-239)||(30170042-30170164)
chr2 (37-239)||(30028444-30028646)
chr2 (37-239)||(30222582-30222784)
chr2 (46-239)||(30112978-30113171)
chr2 (91-196)||(30091168-30091273)
chr2 (91-196)||(30101486-30101591)
chr2 (91-196)||(30127773-30127878)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 30185689 - 30185914
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30185689 cattccaaataaactaacgacttttaactctctcatcccagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 30185788  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||| |    
T  30185789 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggcaagatgatctgatggcattttcgaagctcatccatccctggccattgtt 30185888  T
Q  218 ttactttagtgtaccttttcacccca 243  Q
    |||||| | |||||||||||| ||||    
T  30185889 ttacttcattgtaccttttcatccca 30185914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 30056528 - 30056297
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||||||||||| |||| |||| ||||| ||||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  30056528 cattccatataaactaacgacctttagctctatcatcccagagaagaagtcatcggggacttccaaattatcacctatattttcaagttgaagtagctcc 30056429  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30056428 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaagtaaggatgatctgatggcattttcgaagctcatccatcccaggccattgat 30056329  T
Q  218 ttactttagtgtaccttttcaccccacaggtt 249  Q
    |||||||||||||||||||||||||| |||||    
T  30056328 ttactttagtgtaccttttcaccccataggtt 30056297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 30120133 - 30120364
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||||||| ||| |||| |||| ||||| ||||||| ||||| | |||||||| ||||||||| |||||||| | ||| || ||||||| |    
T  30120133 cattccatataaactaatgacctttagctctatcatcccagagaagaagtcatcggggactttcaaataatctcctatattctgaagctgcagtagcttc 30120232  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    |||| ||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30120233 aactctgggcacttcaacttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 30120332  T
Q  218 ttactttagtgtaccttttcaccccacaggtt 249  Q
    |||||||||||||||||||||||||| |||||    
T  30120333 ttactttagtgtaccttttcaccccataggtt 30120364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 30134831 - 30135062
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||||||| ||| |||| |||| ||||| ||||||| ||||| | |||||||| ||||||||| |||||||| | ||| || ||||||| |    
T  30134831 cattccatataaactaatgacctttagctctatcatcccagagaagaagtcatcggggactttcaaataatctcctatattctgaagctgcagtagcttc 30134930  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    |||| ||| |||  || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30134931 aactctgggcacttcaacttctcaggaagcttgtaaataaaagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 30135030  T
Q  218 ttactttagtgtaccttttcaccccacaggtt 249  Q
    |||||||||||||||||||||||||| |||||    
T  30135031 ttactttagtgtaccttttcaccccataggtt 30135062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 30021941 - 30021827
Alignment:
Q  135 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30021941 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttcgaagctcatccatcccaggccattgatttactttagtgtacctt 30021842  T
Q  235 ttcaccccacaggtt 249  Q
    ||||||||| |||||    
T  30021841 ttcaccccataggtt 30021827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 30038754 - 30038868
Alignment:
Q  135 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30038754 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttcgaagctcatccatcccaggccattgatttactttagtgtacctt 30038853  T
Q  235 ttcaccccacaggtt 249  Q
    ||||||||| |||||    
T  30038854 ttcaccccataggtt 30038868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 30080347 - 30080233
Alignment:
Q  135 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30080347 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttcgaagctcatccatcccaggccattgatttactttagtgtacctt 30080248  T
Q  235 ttcaccccacaggtt 249  Q
    ||||||||| |||||    
T  30080247 ttcaccccataggtt 30080233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 30108232 - 30108346
Alignment:
Q  135 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30108232 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttcgaagctcatccatcccaggccattgatttactttagtgtacctt 30108331  T
Q  235 ttcaccccacaggtt 249  Q
    ||||||||| |||||    
T  30108332 ttcaccccataggtt 30108346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 30232892 - 30233006
Alignment:
Q  135 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30232892 cttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttcgaagctcatccatcccaggccattgatttactttagtgtacctt 30232991  T
Q  235 ttcaccccacaggtt 249  Q
    ||||||||| |||||    
T  30232992 ttcaccccataggtt 30233006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 30789332 - 30789101
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||| |||| || |||| |||||||||| | ||||| ||||| |  ||||||| |||||||||||||||||||| |||| |||||| || |    
T  30789332 cattccatataaattaacaacctttagctctctcatcccggagaagaagtcatcagggactttcaaataatcacctatattttgaagtagaagtaacttc 30789233  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    | || ||| ||| |||||||||||||||| |||||||||| ||||||||| || ||||| ||||| ||||||||||  | ||| ||| | |||||||| |    
T  30789232 agctctgggcactccagcttctcaggaagattgtaaatattagaccaaggtagaatgatttgatgacatttttgaatttgatctatcactggccattgtt 30789133  T
Q  218 ttactttagtgtaccttttcaccccacaggtt 249  Q
    |||    |||| |||||||||||||| |||||    
T  30789132 ttatcaaagtgaaccttttcaccccataggtt 30789101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 30250988 - 30250757
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| ||||| ||| ||| |||| |||||||||| | ||||| ||||| |  ||||||| |||| | ||| ||||||| | |||| | |||||||      
T  30250988 cattccatataaattaatgacctttagctctctcatcccggagaagaagtcatcagggactttcaaaaagtcatctatattatgaagtagtagtagcttt 30250889  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgat 217  Q
    | || ||| ||| ||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||   || | ||||||| | |||||||| |    
T  30250888 agctctgggcactccagcttttcaggaagcttgtaaatatatgaccaaggaatgattatctgatggcattttcttagttgatccatctctggccattgtt 30250789  T
Q  218 ttactttagtgtaccttttcaccccacaggtt 249  Q
    ||||||  ||||| |||||||||||| |||||    
T  30250788 ttacttcggtgtatcttttcaccccataggtt 30250757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 30067274 - 30067096
Alignment:
Q  18 cattccacataaactaacgacttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctcc 117  Q
    ||||||| |||||||||||||   || |||||||||| ||||||| ||||| | || || ||  ||||| ||||||||||||||||||  ||||||   |    
T  30067274 cattccatataaactaacgaccgatagctctctcatcccagagaagaagtcatcggagatttttaaatactcacctatattttcaagtataagtagagtc 30067175  T
Q  118 aactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagct 196  Q
    |||| ||| ||| ||| |||||||||||| |||||||||||||||||| | ||  ||||||||||||||||||| ||||    
T  30067174 aactctgggcactccatcttctcaggaagattgtaaatataagaccaatgcagactgatctgatggcatttttggagct 30067096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 30170164 - 30170042
Alignment:
Q  117 caactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattga 216  Q
    ||||| ||||||| ||| ||||||||||||||  | ||||||||||||||| |  ||||| |||||||||||||||||||  || ||| | ||||||||     
T  30170164 caactctggacactccaacttctcaggaagctcttcaatataagaccaagggaaaatgatttgatggcatttttgaagctggtctatctctggccattgt 30170065  T
Q  217 tttactttagtgtaccttttcac 239  Q
    ||||||| |||||| ||||||||    
T  30170064 tttacttgagtgtatcttttcac 30170042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 30028646 - 30028444
Alignment:
Q  37 acttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctccaactttggacacaccagct 136  Q
    |||||||  ||||||||| ||||||| || || |  | ||||| |||||  || |||||||| | |||| ||||||||  ||||| ||| ||| ||| ||    
T  30028646 acttttacttctctcatcccagagaaaaactcatcagagactttcaaattgtcgcctatattatgaagtagaagtagcctcaactctgggcactccaact 30028547  T
Q  137 tctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctttt 236  Q
    ||||||||||||  | ||||||||||||||| |  ||||| |||||| | |||||||||| ||| |||   |||||||| || ||||  | |||||||||    
T  30028546 tctcaggaagctcattaatataagaccaaggcaaaatgatttgatggaacttttgaagctgatctatcgttggccattgtttgacttcggagtacctttt 30028447  T
Q  237 cac 239  Q
    |||    
T  30028446 cac 30028444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 30222784 - 30222582
Alignment:
Q  37 acttttaactctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctccaactttggacacaccagct 136  Q
    |||||||  ||||||||| ||||||| || || |  | ||||| |||||  || |||||||| | |||| ||||||||  ||||| ||| ||| ||| ||    
T  30222784 acttttacttctctcatcccagagaaaaactcatcagagactttcaaattgtcgcctatattatgaagtagaagtagcctcaactctgggcactccaact 30222685  T
Q  137 tctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtacctttt 236  Q
    ||||||||||||  | ||||||||||||||| |  ||||| |||||| | |||||||||| ||| |||   |||||||| || ||||  | |||||||||    
T  30222684 tctcaggaagctcattaatataagaccaaggcaaaatgatttgatggaacttttgaagctgatctatctttggccattgtttgacttcggagtacctttt 30222585  T
Q  237 cac 239  Q
    |||    
T  30222584 cac 30222582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 30113171 - 30112978
Alignment:
Q  46 tctctcatctcagagaataagtcgttggggacttccaaataatcacctatattttcaagttgaagtagctccaactttggacacaccagcttctcaggaa 145  Q
    ||||||||| ||||||| || || |  | ||||| |||||  || |||||||| | |||| ||||||||  ||||| ||| ||| ||| |||||||||||    
T  30113171 tctctcatcccagagaaaaactcatcagagactttcaaattgtcgcctatattatgaagtagaagtagcctcaactctgggcactccaacttctcaggaa 30113072  T
Q  146 gcttgtaaatataagaccaaggaaggatgatctgatggcatttttgaagctcatccatcccaggccattgatttactttagtgtaccttttcac 239  Q
    |||  | ||||||||||||||| |  ||||| |||||| | |||||||||| ||| |||   |||||||| || ||||  | ||||||||||||    
T  30113071 gctcattaatataagaccaaggcaaaatgatttgatggaacttttgaagctgatctatcattggccattgtttgacttcggagtaccttttcac 30112978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 30091273 - 30091168
Alignment:
Q  91 cctatattttcaagttgaagtagctccaactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttt 190  Q
    |||||||| | |||| ||||||||  ||||| ||| ||| ||| ||||||||||||||  | ||||||||||||||| |  ||||| |||||| | ||||    
T  30091273 cctatattatgaagtagaagtagcctcaactctgggcactccaacttctcaggaagctcattaatataagaccaaggcaaaatgatttgatggaactttt 30091174  T
Q  191 gaagct 196  Q
    ||||||    
T  30091173 gaagct 30091168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 30101591 - 30101486
Alignment:
Q  91 cctatattttcaagttgaagtagctccaactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttt 190  Q
    |||||||| | |||| ||||||||  ||||| ||| ||| ||| ||||||||||||||  | ||||||||||||||| |  ||||| |||||| | ||||    
T  30101591 cctatattatgaagtagaagtagcctcaactctgggcactccaacttctcaggaagctcattaatataagaccaaggcaaaatgatttgatggaactttt 30101492  T
Q  191 gaagct 196  Q
    ||||||    
T  30101491 gaagct 30101486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 30127878 - 30127773
Alignment:
Q  91 cctatattttcaagttgaagtagctccaactttggacacaccagcttctcaggaagcttgtaaatataagaccaaggaaggatgatctgatggcattttt 190  Q
    |||||||| | |||| ||||||||  ||||| ||| ||| ||| ||||||||||||||  | ||||||||||||||| |  ||||| |||||| | ||||    
T  30127878 cctatattatgaagtagaagtagcctcaactctgggcactccaacttctcaggaagctcattaatataagaccaaggcaaaatgatttgatggaactttt 30127779  T
Q  191 gaagct 196  Q
    ||||||    
T  30127778 gaagct 30127773  T

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