View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4388-Insertion-1 (Length: 1149)
Name: NF4388-Insertion-1
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4388-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 444 - 1060
Target Start/End: Original strand, 48017243 - 48017874
Alignment:
| Q |
444 |
cttataaagaactcatgagtgaaaatgaacagttaaaaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtctt |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48017243 |
cttataaagaactcatgagtgaaaatgaacagttaaaaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtctt |
48017342 |
T |
|
| Q |
544 |
cactacttatactagnnnnnnnngtaggggaaaacaacatattgacaatataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattc |
643 |
Q |
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| T |
48017343 |
cactacttatactagaaaaaaggtagggggaaaacaacatattgacaaaataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattc |
48017442 |
T |
|
| Q |
644 |
aaatgttaccatttccagtcatgttttatgcactcaatcgacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaatttta |
743 |
Q |
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| T |
48017443 |
aaatgttaccatttccagtcatgttttatgcactcaatcaacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaatttta |
48017542 |
T |
|
| Q |
744 |
tatttacgtacaagtaaagaatatgtaacatgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatacta |
843 |
Q |
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| T |
48017543 |
tatttacgtacaagtaaagaatatgtaacatgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatacta |
48017642 |
T |
|
| Q |
844 |
catatatataattaagtact-aactggaatgaaagaaatagtgattatcacgagtttaatataatcatttgatgatcacgagcattgtggattgttgcca |
942 |
Q |
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| T |
48017643 |
catatatataattaagtactaaactggaatgaaagaaatagtgatgatcaccagtttaatataatcatttgatgatcacgagcattgtggattgttgcca |
48017742 |
T |
|
| Q |
943 |
ggac--acatagtaaaagtatgtgcccca-ttgttg-tgta-gagctc-tgatattgtaacag-ttttgttct-ggctaaggt--agatgt--gtcgcgg |
1030 |
Q |
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|| | |||||||||||||||||||||| |||||| |||| |||||| |||||||||||||| ||||||||| ||||||||| |||||| ||||||| |
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| T |
48017743 |
gggccaccatagtaaaagtatgtgccccatttgttgttgtaggagctcttgatattgtaacagtttttgttctgggctaaggttaagatgttggtcgcgg |
48017842 |
T |
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| Q |
1031 |
a-gtgagactgttgtc-gtgtctacgatctca |
1060 |
Q |
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| T |
48017843 |
aggtgagactgttgtcggtgtctacgatctca |
48017874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 48016814 - 48017169
Alignment:
| Q |
11 |
atgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgta |
110 |
Q |
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| T |
48016814 |
atgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgta |
48016913 |
T |
|
| Q |
111 |
atggatcaatccgatccattttttaaatttgctatgacgaggtcttggtggaacaatcagcagcaggctaatttgaatctcttatactatta-ttatttg |
209 |
Q |
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| T |
48016914 |
ctggatcaatccgatccattttttaaatttgctatgacgatgtcttggtggaacaatcagcagcaggctaatttgaatctcttatactattatttatttg |
48017013 |
T |
|
| Q |
210 |
gagcaaaaatgacaattgcacaaatcattagtttattagtgtttaaacgggtttacgatcctcttaatttctcaaatcaatagaggaatactgactgtct |
309 |
Q |
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| T |
48017014 |
gagcaaaaatgacaattgcacaaatcattagtttattagtgtttaaacgggtttacgatcctcttaatttctcaaatcaatagaggaat----actgtct |
48017109 |
T |
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| Q |
310 |
cggtcaaaattaatgtaattta-nnnnnnngaagcatagtatatatgatgaaatgcattg |
368 |
Q |
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|
| T |
48017110 |
cggtcaaaattaatgtaatttattttttttgaaacatagtatatatgatgaaatgcattg |
48017169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 48012298 - 48012370
Alignment:
| Q |
13 |
gaccttggggaaaaatatcacgatcttc-acacacaggagcatatacaatacatgtatctaacatataatttt |
84 |
Q |
| |
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||||||||| |||| |||||| |||||| || ||| ||||||||||||||||||||||||||||||||||| |
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| T |
48012298 |
gaccttgggaaaaattatcacaatcttccactcacgtaagcatatacaatacatgtatctaacatataatttt |
48012370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 48012697 - 48012731
Alignment:
| Q |
50 |
agcatatacaatacatgtatctaacatataatttt |
84 |
Q |
| |
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| T |
48012697 |
agcatatacaatacatgtatctaacatataatttt |
48012731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 1414429 - 1414375
Alignment:
| Q |
8 |
actatgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaata |
62 |
Q |
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|||||| |||||||||||| |||||||| ||||||||||| |||||||| |||| |
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| T |
1414429 |
actatggccttggggaaaagtatcacgaacttcacacacattagcatataaaata |
1414375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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