View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4388_low_2 (Length: 432)

Name: NF4388_low_2
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4388_low_2
NF4388_low_2
[»] chr7 (10 HSPs)
chr7 (22-391)||(8361502-8361868)
chr7 (9-186)||(8411440-8411619)
chr7 (103-240)||(8415057-8415197)
chr7 (290-416)||(8410744-8410870)
chr7 (172-254)||(8350224-8350306)
chr7 (172-254)||(8480807-8480889)
chr7 (346-415)||(8355090-8355159)
chr7 (303-357)||(8414996-8415050)
chr7 (306-415)||(8349025-8349134)
chr7 (9-63)||(8405844-8405898)
[»] chr4 (1 HSPs)
chr4 (308-416)||(51650242-51650350)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 8361868 - 8361502
Alignment:
22 ttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaa 121  Q
    ||||||||||||||||||||| ||| ||||||| | |||||| |||||| ||||| |||   ||||||||||||||| || |||||||| ||||||||||    
8361868 ttgttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaa 8361772  T
122 tgtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaatt 216  Q
    |||||||||||||||||    |||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
8361771 tgtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaatt 8361672  T
217 gtcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatatagtgctgatcgcaactttgtg 316  Q
     |||| | |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
8361671 ttcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatataatgctgatcgcaaccttgtg 8361572  T
317 cttgggttg--tgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtg 391  Q
    |||||||||  | |||||||||       |||||||||||||| |||||||| |||||| || ||||||||||||||    
8361571 cttgggttgttttttttgaacc-------tcatctttccattgtcctactctcaacaagtcaattgggaatggtgtg 8361502  T

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Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 8411619 - 8411440
Alignment:
9 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
8411619 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt 8411520  T
109 ttgtttgaaacaatgtcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata 186  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||       ||||||||||||||||||||||||    
8411519 ttgtttgaaacaatgtcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata 8411440  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
103 aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa 199  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||       ||||||||||||| ||||   |||||||||| ||||||||    
8415197 aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa 8415098  T
200 cctattttgatttaattgtcatgaaggctgaaacaatcact 240  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||    
8415097 cctatttagattcgattttcatgatggctgaaacaatcact 8415057  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 416
Target Start/End: Complemental strand, 8410870 - 8410744
Alignment:
290 atatatagtgctgatcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtg 389  Q
    |||||| ||||| ||||||| ||| ||||||  |||| ||||||||||  |||| || |||||||||| |||||||| ||| ||||| ||||||||||||    
8410870 atatatcgtgctaatcgcaaatttctgcttgaattgttttttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtg 8410771  T
390 tgaaattcctcaatcaccacctttctg 416  Q
    ||||||||||||||| |||||||||||    
8410770 tgaaattcctcaatctccacctttctg 8410744  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
172 atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat 254  Q
    |||| |||||||||| ||| ||||||||||||||| ||||||||| ||||||||||||||  ||||||||||||| |||||||    
8350306 atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat 8350224  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
172 atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat 254  Q
    |||| |||||||||| |||  |||||||||| ||| ||||||||| ||||||||||||||  ||||||||||||| |||||||    
8480807 atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat 8480889  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 8355159 - 8355090
Alignment:
346 atctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcaccacctttct 415  Q
    |||||||||||  |||||||| || |||||| ||||||||| ||||||||||||||||| ||||||||||    
8355159 atctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttct 8355090  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 8415050 - 8414996
Alignment:
303 atcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattg 357  Q
    |||||||||||||||||| ||||| | ||||||||  ||||||||||||||||||    
8415050 atcgcaactttgtgcttgagttgtttcttgaaccatttacttcatctttccattg 8414996  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 8349134 - 8349025
Alignment:
306 gcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatca 405  Q
    |||| |||||| ||| ||||| ||| ||||||  |||| ||||||||| ||| || ||||| |||||  || |||| |||| ||||||||||||||||      
8349134 gcaaatttgtggttgagttgtttttagaaccatttactgcatctttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattg 8349035  T
406 ccacctttct 415  Q
    ||||||||||    
8349034 ccacctttct 8349025  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 8405898 - 8405844
Alignment:
9 gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggtt 63  Q
    |||||||||||||||||||||||||  ||||||| ||| ||||||| | ||||||    
8405898 gaagaatatgatgttgttttgaaaaaataatttgttgtgcaacacttgtttggtt 8405844  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 51650242 - 51650350
Alignment:
308 aactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcacc 407  Q
    ||||||||||||| ||||   |||||||||  |||| ||||||||| | | |||||||| |||||| || |||| ||||||||| ||||||| |||| ||    
51650242 aactttgtgcttgagttggactttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgcc 51650341  T
408 acctttctg 416  Q
    |||||||||    
51650342 acctttctg 51650350  T

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