View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4388_low_2 (Length: 432)
Name: NF4388_low_2
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4388_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 22 - 391
Target Start/End: Complemental strand, 8361868 - 8361502
Alignment:
| Q |
22 |
ttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaa |
121 |
Q |
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| T |
8361868 |
ttgttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaa |
8361772 |
T |
|
| Q |
122 |
tgtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaatt |
216 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
8361771 |
tgtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaatt |
8361672 |
T |
|
| Q |
217 |
gtcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatatagtgctgatcgcaactttgtg |
316 |
Q |
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| T |
8361671 |
ttcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatataatgctgatcgcaaccttgtg |
8361572 |
T |
|
| Q |
317 |
cttgggttg--tgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtg |
391 |
Q |
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| T |
8361571 |
cttgggttgttttttttgaacc-------tcatctttccattgtcctactctcaacaagtcaattgggaatggtgtg |
8361502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 8411619 - 8411440
Alignment:
| Q |
9 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt |
108 |
Q |
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| T |
8411619 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgt |
8411520 |
T |
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| Q |
109 |
ttgtttgaaacaatgtcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata |
186 |
Q |
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| T |
8411519 |
ttgtttgaaacaatgtcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata |
8411440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
| Q |
103 |
aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa |
199 |
Q |
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| T |
8415197 |
aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa |
8415098 |
T |
|
| Q |
200 |
cctattttgatttaattgtcatgaaggctgaaacaatcact |
240 |
Q |
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| T |
8415097 |
cctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 416
Target Start/End: Complemental strand, 8410870 - 8410744
Alignment:
| Q |
290 |
atatatagtgctgatcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtg |
389 |
Q |
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|||||| ||||| ||||||| ||| |||||| |||| |||||||||| |||| || |||||||||| |||||||| ||| ||||| |||||||||||| |
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| T |
8410870 |
atatatcgtgctaatcgcaaatttctgcttgaattgttttttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtg |
8410771 |
T |
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| Q |
390 |
tgaaattcctcaatcaccacctttctg |
416 |
Q |
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| T |
8410770 |
tgaaattcctcaatctccacctttctg |
8410744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
| Q |
172 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
254 |
Q |
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|||| |||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
8350306 |
atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8350224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
| Q |
172 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
254 |
Q |
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| T |
8480807 |
atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8480889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 8355159 - 8355090
Alignment:
| Q |
346 |
atctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcaccacctttct |
415 |
Q |
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| T |
8355159 |
atctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttct |
8355090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 8415050 - 8414996
Alignment:
| Q |
303 |
atcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattg |
357 |
Q |
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| T |
8415050 |
atcgcaactttgtgcttgagttgtttcttgaaccatttacttcatctttccattg |
8414996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 415
Target Start/End: Complemental strand, 8349134 - 8349025
Alignment:
| Q |
306 |
gcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatca |
405 |
Q |
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| T |
8349134 |
gcaaatttgtggttgagttgtttttagaaccatttactgcatctttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattg |
8349035 |
T |
|
| Q |
406 |
ccacctttct |
415 |
Q |
| |
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|||||||||| |
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| T |
8349034 |
ccacctttct |
8349025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 8405898 - 8405844
Alignment:
| Q |
9 |
gaagaatatgatgttgttttgaaaatgtaatttggtgttcaacactcgcttggtt |
63 |
Q |
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| T |
8405898 |
gaagaatatgatgttgttttgaaaaaataatttgttgtgcaacacttgtttggtt |
8405844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 51650242 - 51650350
Alignment:
| Q |
308 |
aactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcacc |
407 |
Q |
| |
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||||||||||||| |||| ||||||||| |||| ||||||||| | | |||||||| |||||| || |||| ||||||||| ||||||| |||| || |
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| T |
51650242 |
aactttgtgcttgagttggactttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgcc |
51650341 |
T |
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| Q |
408 |
acctttctg |
416 |
Q |
| |
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||||||||| |
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| T |
51650342 |
acctttctg |
51650350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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