View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4388_low_3 (Length: 316)

Name: NF4388_low_3
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4388_low_3
NF4388_low_3
[»] chr4 (2 HSPs)
chr4 (18-201)||(28094925-28095108)
chr4 (264-297)||(28095171-28095204)
[»] chr1 (2 HSPs)
chr1 (78-197)||(26155653-26155772)
chr1 (78-197)||(26168951-26169070)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 28094925 - 28095108
Alignment:
18 gatatggtttggcattgtgcgaaaggacgagagattcctggtatgccgattttgtccgttgcagaatcatgtgttccaggccaaacaatcattttgatct 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28094925 gataaggtttggcattgtgcgaaaggacgagagattcctggtatgccgattttgtccgttgcagaatcatgtgttccaggccaaacaatcattttgatct 28095024  T
118 taagtttgtcagggttgagatttgccatccagttttttctgtctgatgggtggtaatcacaaccagggtagttttctcctaagc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28095025 taagtttgtcagggttgagatttgccatccagttttttctgtctgatgggtggtaatcacaaccagggtagttttctcctaagc 28095108  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 28095171 - 28095204
Alignment:
264 gacacctgagaacccattttctttaacatcaatg 297  Q
    ||||||||||||||||||||||||||||||||||    
28095171 gacacctgagaacccattttctttaacatcaatg 28095204  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 26155772 - 26155653
Alignment:
78 gcagaatcatgtgttccaggccaaacaatcattttgatcttaagtttgtcagggttgagatttgccatccagttttttctgtctgatgggtggtaatcac 177  Q
    ||||||||||||||||| ||||| |||||    ||||| | || ||| || |||||||||     ||||||||||||||| |||||||| || || |||     
26155772 gcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgatattcag 26155673  T
178 aaccagggtagttttctcct 197  Q
    |||||||||||| |||||||    
26155672 aaccagggtagtcttctcct 26155653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 26169070 - 26168951
Alignment:
78 gcagaatcatgtgttccaggccaaacaatcattttgatcttaagtttgtcagggttgagatttgccatccagttttttctgtctgatgggtggtaatcac 177  Q
    ||||||||||||||||| ||||| |||||    ||||| | || ||| || |||||||||     ||||||||||||||| |||||||| || || |||     
26169070 gcagaatcatgtgttcctggccatacaatttgattgatatgaactttctctgggttgagaccattcatccagttttttctatctgatggatgatattcag 26168971  T
178 aaccagggtagttttctcct 197  Q
    |||||||||||| |||||||    
26168970 aaccagggtagtcttctcct 26168951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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