View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4388_low_4 (Length: 284)
Name: NF4388_low_4
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4388_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 44094128 - 44094394
Alignment:
| Q |
1 |
ttttctagtgttcacttaattcaaagtgttttaatattactactattactgttattgttacgtactgttccattgatcatatgatttctcccatgcatat |
100 |
Q |
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| T |
44094128 |
ttttctagtgttcacttaattcaaagtgttttaatattactactattactgttattgttacgtactattccattgatcatatgatttctcccatgcatat |
44094227 |
T |
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| Q |
101 |
agaatatagatatatcatatatgaatagatgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcatta |
200 |
Q |
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| T |
44094228 |
agaatatagatatatcatatatgaatagatgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcatta |
44094327 |
T |
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| Q |
201 |
tgattgccagtaacaatagtagaatccattccatctccgaatatcattaaattcttcactgtcttct |
267 |
Q |
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| T |
44094328 |
tgattgccagtaacaatagtagaatccattccatctccgaatatcattaaattcttcactgtcttct |
44094394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 44086195 - 44086071
Alignment:
| Q |
129 |
atgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcattatgattgccagtaacaatagtagaatcca |
228 |
Q |
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| T |
44086195 |
atgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaacaatagtagaatcca |
44086096 |
T |
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| Q |
229 |
ttccatctccgaatatcattaaatt |
253 |
Q |
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| T |
44086095 |
ttccatctccaaatatcattaaatt |
44086071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 44069007 - 44069131
Alignment:
| Q |
129 |
atgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcattatgattgccagtaacaatagtagaatcca |
228 |
Q |
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| T |
44069007 |
atgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaacactagtagaatcca |
44069106 |
T |
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| Q |
229 |
ttccatctccgaatatcattaaatt |
253 |
Q |
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| T |
44069107 |
ttccatctccaaatatcattaaatt |
44069131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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