View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4388_low_4 (Length: 284)

Name: NF4388_low_4
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4388_low_4
NF4388_low_4
[»] chr8 (3 HSPs)
chr8 (1-267)||(44094128-44094394)
chr8 (129-253)||(44086071-44086195)
chr8 (129-253)||(44069007-44069131)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 44094128 - 44094394
Alignment:
1 ttttctagtgttcacttaattcaaagtgttttaatattactactattactgttattgttacgtactgttccattgatcatatgatttctcccatgcatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
44094128 ttttctagtgttcacttaattcaaagtgttttaatattactactattactgttattgttacgtactattccattgatcatatgatttctcccatgcatat 44094227  T
101 agaatatagatatatcatatatgaatagatgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44094228 agaatatagatatatcatatatgaatagatgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcatta 44094327  T
201 tgattgccagtaacaatagtagaatccattccatctccgaatatcattaaattcttcactgtcttct 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44094328 tgattgccagtaacaatagtagaatccattccatctccgaatatcattaaattcttcactgtcttct 44094394  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 129 - 253
Target Start/End: Complemental strand, 44086195 - 44086071
Alignment:
129 atgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcattatgattgccagtaacaatagtagaatcca 228  Q
    ||||||||||||  |||||  |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||||||    
44086195 atgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaacaatagtagaatcca 44086096  T
229 ttccatctccgaatatcattaaatt 253  Q
    |||||||||| ||||||||||||||    
44086095 ttccatctccaaatatcattaaatt 44086071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 44069007 - 44069131
Alignment:
129 atgagtgattaaggattgattaacttaccaaaagtagctgaacgaaaagtagtagaaccatctatagcattatgattgccagtaacaatagtagaatcca 228  Q
    ||||||||||||  |||||  |||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||| ||||||||||||    
44069007 atgagtgattaactattgaagaacttaccgaaagtagctgaacgaaatgtggtagaaccatctatagcattttgattaccagtaacactagtagaatcca 44069106  T
229 ttccatctccgaatatcattaaatt 253  Q
    |||||||||| ||||||||||||||    
44069107 ttccatctccaaatatcattaaatt 44069131  T

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