View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4388_low_5 (Length: 219)

Name: NF4388_low_5
Description: NF4388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4388_low_5
NF4388_low_5
[»] chr4 (1 HSPs)
chr4 (16-211)||(5127689-5127884)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 5127884 - 5127689
Alignment:
16 ggaaattggccaaaacttttctaaggaatccatagcgaactttggagacaagagttaggtcagatttcttacgcaatgaagatgatgacatgttatgtgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5127884 ggaaattggccaaaacttttctaaggaatccatagcgaactttggagacaagagttaggtcagatttcttacgcaatgaagatgatgacatgttatgtgc 5127785  T
116 tgttctaccatgtttcatagtttctttgctcacaattcctttaatgtttcctccattctctaagaaacatgcttcaaactcataatcatgatgatg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5127784 tgttctaccatgtttcatagtttctttgctcacaattcctttaatgtttcctccattctctaagaaacatgcttcaaactcataatcatgatgatg 5127689  T

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