View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4389-Insertion-2 (Length: 536)
Name: NF4389-Insertion-2
Description: NF4389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4389-Insertion-2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Complemental strand, 32991535 - 32991087
Alignment:
| Q |
8 |
ggaacatgacaaataatacagtttttcagtcccgtgacatgttgttcttctttttgtgaatttttatatataaaaagagtatggtaatgactgactcata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991535 |
ggaacatgacaaataatacagtttttcagtcccgtgacatgttgttcttctttttgtgaatttttatatataaaaagagtatggtaatgactgactcata |
32991436 |
T |
|
| Q |
108 |
taacaggtcagaaactagtactaccattgtggtttagaactgttgattgagattaacatctgaaattctatttataaggac-aagattgtgttactttta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
32991435 |
taacaggtcagaaactagtactaccattgtggtttagagctgttgattgagattaacatctgaaattctattgataaagacaaagattgtgttactttta |
32991336 |
T |
|
| Q |
207 |
ctctaactacttattctttttatttcaatatgtgtggtaaaaacaaatcattcattaattaccnnnnnnnnnnnnnnnnnctttctaggatgataatctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32991335 |
ctctaactacttattctttttatttcaatatgtgtggtaaaaacaaatcattcattaattac--------ttttttttttctttctaggataataatctt |
32991244 |
T |
|
| Q |
307 |
agcaagagaatgcaagctctttaacac-cattttttgattggttcaaatttgcatggatcttnnnnnnnnnttatgtgactcgtagattttgatgagact |
405 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
32991243 |
agcaagagaatacaagctctttaacacacattctttgattggttcaaatttgcatgggtcttaacaaatttttatgtgactcgtaaattttgatgagact |
32991144 |
T |
|
| Q |
406 |
cgtataaatgttaacccgtccaagatatatagtgtgtcagaaaattggtattaaaga |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991143 |
cgtataaatgttaacccgtccaagatatatagtgtgtcagaaaattggtattaaaga |
32991087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University