View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4389_high_2 (Length: 455)
Name: NF4389_high_2
Description: NF4389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4389_high_2 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 37896185 - 37895793
Alignment:
| Q |
17 |
aagtttaatgtttatgagacagattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagata |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896185 |
aagtttaatgtttatgagactgattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagata |
37896086 |
T |
|
| Q |
117 |
gagaaggtggtcttgaggttgggttggtgtttaaaagtggagaatttgaatatttttgtgctgtaattgaacatggacttgaagctttgaaatgctaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37896085 |
gagaaggtggtcttgaggttgggttggtgtttaaaagtggagaatttgaatatttttgtgctgtaattgaacatggacttgaagctttgaaatgctaaca |
37895986 |
T |
|
| Q |
217 |
aaggtgctaccattgtcttttaattagtttatgcg---nnnnnnnattttgagaaatgattttggaacacttttctaa--aatcgacaatgtataaaact |
311 |
Q |
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| T |
37895985 |
aaggtgctaccattgtctcttaattagtttatgcgttttttttttattttgagaaattcttttggaacactgttctaaacaatcgacaatgtataaaact |
37895886 |
T |
|
| Q |
312 |
acagcccagctaaacatttgtatctctgaattgtcatctctaattgactttcagaatctttcacctgcattgtacactttctttaattttgtc |
404 |
Q |
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| T |
37895885 |
acagcccagctaaacatttgtatctctgaattgtcatctctaattgactttcagaatctttcatctgcattgtacacttgctttaattttgtc |
37895793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 37953273 - 37953399
Alignment:
| Q |
17 |
aagtttaatgtttatgagacagattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagata |
116 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37953273 |
aagtttaatgtttatgagactgattttggatttggaaaaccagttaaagttgaaatgatgcattcattaaagtgtatgtctattgctgaaagtggagata |
37953372 |
T |
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| Q |
117 |
gagaaggtggtcttgaggttgggttgg |
143 |
Q |
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| T |
37953373 |
gagaaggtggacttgaggttgggttgg |
37953399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 37959017 - 37959144
Alignment:
| Q |
17 |
aagtttaatgtttatgagacagattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagata |
116 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||||| | |||| ||||||||||||||||||||||| | ||| |
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| T |
37959017 |
aagtttaatgtttatgagactgattttggatttggaaaacctgctaaagttgaaatggtgcacccatttacgtgtatgtctattgctgaaagtgaaaata |
37959116 |
T |
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| Q |
117 |
gagaaggtggtcttgaggttgggttggt |
144 |
Q |
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|||||||||| ||||||||||||||||| |
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| T |
37959117 |
gagaaggtggacttgaggttgggttggt |
37959144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 444
Target Start/End: Complemental strand, 37895344 - 37895314
Alignment:
| Q |
414 |
tttctttttacccttcaaattgatgagaata |
444 |
Q |
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| T |
37895344 |
tttctttttacccttcaaattgatgagaata |
37895314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 39711971 - 39711739
Alignment:
| Q |
17 |
aagtttaatgtttatgagacagattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagata |
116 |
Q |
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|||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||| | |||||| || ||||| ||||||||||||||||| |
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| T |
39711971 |
aagtttaatgtttatgagaccaattttggatttggaaaacctgttaaagttgagatggtgcatgcatttaagggtgtgtctcttgctgaaagtggagatg |
39711872 |
T |
|
| Q |
117 |
gagaaggtggtcttgaggttgggttggtgtttaaaagtggagaatttgaatatttttgtgctgtaattgaacatggacttgaagctttgaaa---tgcta |
213 |
Q |
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|||||||||| |||||| |||||||||| ||||||||| || ||||||||||| | | || | ||| |||| |||||||||| ||| ||| | || |
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| T |
39711871 |
gagaaggtggacttgagtttgggttggtacttaaaagtgaggagtttgaatatttctcttctcttattcaacaaggacttgaagtttttaaatattagta |
39711772 |
T |
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| Q |
214 |
acaaaggtgctaccattgtcttttaattagttt |
246 |
Q |
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|||||| |||||| ||| || |||||||||||| |
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| T |
39711771 |
acaaagatgctacaattatcatttaattagttt |
39711739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 11527590 - 11527401
Alignment:
| Q |
20 |
tttaatgtttatgagacagattttggatttggtagacctgttaaagttgaaatggtgcattcgtttaagtgtatgtctattgctgaaagtggagatagag |
119 |
Q |
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||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||| | | || | | ||||| ||||||||||||||||| ||| |
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| T |
11527590 |
tttaatgtttatgagaccgaatttggatttggaagacctgttaaagttgagatggtgcatccatctatggctgtgtctcttgctgaaagtggagatggag |
11527491 |
T |
|
| Q |
120 |
aaggtggtcttgaggttgggttggtgtttaaaagtggagaatttgaatatttttgtgctgtaattgaacatggacttgaagctttgaaat |
209 |
Q |
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||||||| |||||| |||||||||| ||||||||| |||||||||||||| | | || | ||| |||| |||||||||||||| |||| |
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| T |
11527490 |
aaggtggacttgagtttgggttggtacttaaaagtgaggaatttgaatatttatcttctctcattcaacaaggacttgaagctttaaaat |
11527401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 261254 - 261314
Alignment:
| Q |
186 |
aacatggacttgaagctttgaaatgctaacaaaggtgctaccattgtcttttaattagttt |
246 |
Q |
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|||| |||||||||||||| ||| |||||||| |||||||||| || |||||||||||| |
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| T |
261254 |
aacaaggacttgaagcttttaaacattaacaaagatgctaccattatcatttaattagttt |
261314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 2828450 - 2828510
Alignment:
| Q |
186 |
aacatggacttgaagctttgaaatgctaacaaaggtgctaccattgtcttttaattagttt |
246 |
Q |
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|||| |||||||||||||| ||| |||||||| |||||||||| || |||||||||||| |
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| T |
2828450 |
aacaaggacttgaagcttttaaacattaacaaagatgctaccattatcatttaattagttt |
2828510 |
T |
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