View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4389_low_1 (Length: 615)
Name: NF4389_low_1
Description: NF4389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4389_low_1 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 25197238 - 25197816
Alignment:
| Q |
1 |
acatcaacatggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgagacggtaatctagatg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197238 |
acatcaacatggtgcttaatattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgagacggtaatctagatg |
25197337 |
T |
|
| Q |
101 |
caagtaaccttagaaaaatgaaaacggtatgttttacaccaaaatttcatgtttccataaaatatatttcatcccttgcacttcatattaatcatgtcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25197338 |
caagtaaccttagaaaaatgaaaacggtatgttttacaccaaaattacatgtttccataaa-tatatttcatcccttgcacttcatattaatcatgtcac |
25197436 |
T |
|
| Q |
201 |
aattttggtcacaattatcaatccaattgtactacatcttttcaaagcttcattaacattcttatgcatgcatccagtaaataactatcaaaattttgtt |
300 |
Q |
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|||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25197437 |
aatt------------atcaatacaattgtactacatcttttcatagcttcattaacattcttatgc----atccagtaaataactatcaaaattttgtt |
25197520 |
T |
|
| Q |
301 |
ttattttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197521 |
ttattttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaagg |
25197620 |
T |
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| Q |
401 |
tatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaattcaaacctgaa |
500 |
Q |
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| T |
25197621 |
tatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaattcaaacctgaa |
25197720 |
T |
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| Q |
501 |
agattttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaatcggttcacgtgtctgtcccggacaacatttaggc |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25197721 |
agattttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaatcggttcacgtgtctgtcccgggcaacatttaggc |
25197816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 562
Target Start/End: Original strand, 1763147 - 1763318
Alignment:
| Q |
391 |
atttaaaaggtatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaatt |
490 |
Q |
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|||| ||||||||| |||||||||||||||| | | |||| |||||||| || ||||| || ||||| || | ||||| |||||||| | || |
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| T |
1763147 |
atttcaaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagtt |
1763246 |
T |
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| Q |
491 |
caaacctgaaagattttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaat |
562 |
Q |
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||| || ||||||||| ||||||| |||| |||| | |||||| ||||||||| ||| |||||||||||||| |
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| T |
1763247 |
caatccggaaagatttgcaaatggagtgcatggagcatgcaagattccacaagtttacatgccatttggaat |
1763318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 307 - 352
Target Start/End: Original strand, 1763063 - 1763108
Alignment:
| Q |
307 |
tgcagttaacaatggtgattcaagagactttaaggctttattcacc |
352 |
Q |
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| T |
1763063 |
tgcagttaacaatggtgattcaagagacattgaggctttatccacc |
1763108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 305 - 593
Target Start/End: Original strand, 19208058 - 19208346
Alignment:
| Q |
305 |
tttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaaggtatc |
404 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||| |||| | | | ||| | | |||||| |||| ||||| | |||||||||||||| |
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| T |
19208058 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccaccagcagtatttatcaccagaacatcattccaagatattaatttaaaaggtatc |
19208157 |
T |
|
| Q |
405 |
aaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaattcaaacctgaaagat |
504 |
Q |
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||| ||||||||||||| | ||| ||||||||||| ||||||| || |||||| ||||| |||||| |||||||||||| ||||| |||||||||| |
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| T |
19208158 |
aaagttccaaaaggaattaatatgcagattccaattgcgatattgcaacaagacattgatatctgggggcccgatgcacacgagttcaatcctgaaagat |
19208257 |
T |
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| Q |
505 |
tttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaatcggttcacgtgtctgtcccggacaacattta |
593 |
Q |
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| T |
19208258 |
ttgcaaatggtgtgcttggagcctgcaagattccacaagcttatatgccatttggaatcggttcccgtgtctgtcctggacagcattta |
19208346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 19207636 - 19207778
Alignment:
| Q |
1 |
acatcaacatggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgagacggtaatctagatg |
100 |
Q |
| |
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|||||| | ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| || || | ||||||| ||||| |
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| T |
19207636 |
acatcatcttggtgcttaatgttgttagctaaataccaagattggcaagatcgtgctcgtgcagaggtgcttgaagtatgcggaaatggtaatccagatg |
19207735 |
T |
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| Q |
101 |
caagtaaccttagaaaaatgaaaacggtatgttttacaccaaa |
143 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||| |
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| T |
19207736 |
caagtatacttagaaccatgaaaacggtatgttttacaccaaa |
19207778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 305 - 593
Target Start/End: Original strand, 10318 - 10606
Alignment:
| Q |
305 |
tttgcagttaacaatggtgattcaagagactttaaggctttattcacctgtattgtttgccgcaagaacaacattaaaagattatgatttaaaaggtatc |
404 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||| | || | | | ||| | | |||||| | || ||||| | | ||||||||||| |
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| T |
10318 |
tttgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagaacagctttccaagatattaacataaaaggtatc |
10417 |
T |
|
| Q |
405 |
aaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaattcaaacctgaaagat |
504 |
Q |
| |
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||| ||||||||||||| | |||||||||||||||||| ||||| ||| | |||| ||||| ||||||| |||||||||||| ||||| |||||||||| |
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| T |
10418 |
aaagttccaaaaggaatgaatattcagattccaatcccaatattgcagcatgacattgatatttggggggccgatgcacacgagttcaatcctgaaagat |
10517 |
T |
|
| Q |
505 |
tttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaatcggttcacgtgtctgtcccggacaacattta |
593 |
Q |
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| T |
10518 |
ttgcaaatggtgtgcttagagcctgcaagattccacaagcttatatgccatttggaatcggttctcgtgtctgtccaggacagcattta |
10606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 9949 - 10084
Alignment:
| Q |
8 |
catggtgcttagtattgttggctaaataccaagattggcaagaccgtgctcgtgcagaggtacttgaagtttgtcgagacggtaatctagatgcaagtaa |
107 |
Q |
| |
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||||||||||| | ||||| |||| |||||||||||||||||| |||| |||||| ||||| |||||||||||| || | | |||||||||||||| || |
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| T |
9949 |
catggtgcttaatgttgttagctacataccaagattggcaagatcgtgttcgtgcggaggtgcttgaagtttgtggaaatgataatctagatgcaaatat |
10048 |
T |
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| Q |
108 |
ccttagaaaaatgaaaacggtatgttttacaccaaa |
143 |
Q |
| |
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||||||| |||||||||||| ||||||||||||| |
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| T |
10049 |
acttagaagcatgaaaacggtacgttttacaccaaa |
10084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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