View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4391-Insertion-1 (Length: 1070)
Name: NF4391-Insertion-1
Description: NF4391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4391-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 6 - 1053
Target Start/End: Complemental strand, 51579358 - 51578301
Alignment:
| Q |
6 |
caagattttcatcaatcacgtcatatatatatagtgtggataaaattggttatttgcttttagcatagattacatgaattcactaaatcttctgatatgc |
105 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51579358 |
caagattttcatcaatcacgtcatatatata--gtgtggataaaattggttatttgtttttagcatagattacataaattcactaaatcttctgatatgc |
51579261 |
T |
|
| Q |
106 |
ttgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcattggatgcgtgaccagtaccgtgcctactgt |
205 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
51579260 |
ttgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcatcggatgcgtgaccagtaccgggcctactgt |
51579161 |
T |
|
| Q |
206 |
acgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacnnnnnnnnnnnnn--gctataaca |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
51579160 |
acgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacattttttttttttttgctttaaca |
51579061 |
T |
|
| Q |
304 |
aacttcnnnnnnnttatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgnnnnnnn |
403 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51579060 |
aacttcaaaaaaattatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgttttttt |
51578961 |
T |
|
| Q |
404 |
nncttctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattcc |
503 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51578960 |
---ttctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattcc |
51578864 |
T |
|
| Q |
504 |
atggg---aggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaatatgtgttacaagagcacttcgatcactg |
600 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51578863 |
atgggcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaatttgtgttacaagagcacttcgatcactg |
51578764 |
T |
|
| Q |
601 |
atcagttatatgttatcaaagtcagagagaacttcgatnnnnnnnntgccaccaaatttttaattaataggagtaaaagtgcagcgttgttggtattaat |
700 |
Q |
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| T |
51578763 |
atcagttatatgttatcaaagtcagagagaacttcaataaaaaaaatgccaccaaatttttaattaataggagtaaaagtgtagcgttgttggtattaat |
51578664 |
T |
|
| Q |
701 |
gtatcnnnnnnnnagttaacaatctcattccactgtggaaagggactcgactaatcaagagtttgattgaaagttaagtaaaatctaacagattctactt |
800 |
Q |
| |
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| T |
51578663 |
gtatcttttttttagttaacaatctcattccactgtggaaagggactcgactaatcaagagtttgattgaaagttaagtaaaatctaacagattctactt |
51578564 |
T |
|
| Q |
801 |
aaagataaaattcattaatcacttgaaccctaatgcttggtttacaagttacaacttattcttaattactaactgtatttaaaatagaattgattgtcac |
900 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51578563 |
aaagataaaattcattaatcacttgaaccctattacttggtttacaagttacaacttattcttaattactaactgtatttaaaatagaattgattgtcac |
51578464 |
T |
|
| Q |
901 |
tgtatg-tatatatgaaattctaattttgataatatagtgg-ttttggttg-tttacatgcagtatctg-tgcatca-tctttg-tgctgctgac-aaac |
993 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||| ||| |
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| T |
51578463 |
tgtatgttatatatgaaattctaattttgataatatagtggtttttggttgttttacatgcagtatctgttgcgtcattctttgttgctgctgacaaaat |
51578364 |
T |
|
| Q |
994 |
tatcttggc-tgtgc-agaaaac-atccctactgctagaagagtctctgaaacaagaaagatg |
1053 |
Q |
| |
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||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
51578363 |
tatcttggcttgtgcaagaaaacaatccctactgctagaagaatctctgaaacaagaaagatg |
51578301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 509 - 571
Target Start/End: Complemental strand, 302592 - 302530
Alignment:
| Q |
509 |
aggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcaacttaaa |
571 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||||| |||||| ||||||| |
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| T |
302592 |
aggcaaacctcaattataccgctcaggcacttatcatatctgctggtatgatctcgacttaaa |
302530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 303476 - 303433
Alignment:
| Q |
126 |
ttttcttaatatgcagaaggtgtgcgtgctggattcaaggcagc |
169 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
303476 |
ttttcttgaaatgcagaaggtgtgcgtgctggattcaaggcagc |
303433 |
T |
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