View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4391-Insertion-2 (Length: 557)
Name: NF4391-Insertion-2
Description: NF4391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4391-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 7 - 551
Target Start/End: Original strand, 36531482 - 36532026
Alignment:
| Q |
7 |
agctagctacaaagactacgaaaaagaattgcagcctggatggtcctcctcgaggccnnnnnnnnnnnncatgaaatgctctaaatagagaaacctgcac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36531482 |
agctagctacaaagactacgaaaaagaattgcagcctggatgttcctcctcgaggccttttttctttttcatgaaatgctctaaatagagaaacctgcac |
36531581 |
T |
|
| Q |
107 |
aaggctttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatctgagtcgatagcgccaacaaa |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36531582 |
aaggctttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatctgagtcgatagcgccaacaaa |
36531681 |
T |
|
| Q |
207 |
taagccgcgacgggatggatgcttctgtgatagaaagctttaacaattgtgattatgttgattgcataaacactactagatcccgagctagcaaagatgg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36531682 |
taagccgcgacgggatggatgcttctgtgatagaaagctttaacaattgtgattatgttgattgcataaacaccactagatcccgagctagcaaagatgg |
36531781 |
T |
|
| Q |
307 |
taatcaacacatgttctttcaaagagaatggccccgggttcaacgaaaaagaccatgttgtaaaaggtacttgaattggttttgtgggaagtgttgcagc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36531782 |
taatcaacacatgttctttcaaagagaatggccccgggttcaacgaaaaagaccatgttgtaaaaggtacttgaattggttttgtgggaagtgttgcagc |
36531881 |
T |
|
| Q |
407 |
cataagtttcccaagtgggagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaatgcaagg |
506 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36531882 |
cataagtttcccaagtggcagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaatgcaagg |
36531981 |
T |
|
| Q |
507 |
agaatacatgatgctaaccctagaacccatgtccggaatggtagc |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36531982 |
agaatacatgatgctaaccctagaacccatgtccggaatgttagc |
36532026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 544
Target Start/End: Original strand, 36537094 - 36537631
Alignment:
| Q |
7 |
agctagctacaaagactacgaaaaagaattgcagcctggatggtcctcctcgaggccnnnnnnnnnnnncatgaaatgctctaaatagagaaacctgcac |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || | ||||||| ||||| |||||||||| ||||||| ||| || ||||| |
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| T |
36537094 |
agctagctacaaagactaagaaaaagaattgcagcctagaagttcctcctttaggccttttttctttttcatgaaatgccctaaataaagacacttgcac |
36537193 |
T |
|
| Q |
107 |
aaggctttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatctgagtcgatagcgccaacaaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||| |
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|
| T |
36537194 |
aaggatttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccggcccatccatacccaagtatctgagtcgatagcgctaacaaa |
36537293 |
T |
|
| Q |
207 |
taagccgcgacgggatggatgcttctgtgatagaaagctttaacaattgtgattatgttgattgcataaacactactagatcccgagctagcaaagatgg |
306 |
Q |
| |
|
|||||||| | |||||||||| | || ||||||||| | |||||||||||||||||||| || ||||| |||| |||||||| ||| ||||||||||| |
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|
| T |
36537294 |
taagccgctatgggatggatgttcctatgatagaaacccttaacaattgtgattatgttaatggcatatacaccgctagatcctgaggtagcaaagatgc |
36537393 |
T |
|
| Q |
307 |
taatcaacacatgttctttcaaagagaatggccccgggttcaacgaaaaagaccatgttgtaaaaggtacttgaattggttttgtgggaagtgttgcagc |
406 |
Q |
| |
|
| ||||| |||||||| |||| |||||||| ||| || ||||||||||||| | | |||| ||||| |||||||||| |||| |||||||||||||||| |
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|
| T |
36537394 |
tgatcaaaacatgttccttcacagagaatgaccctggattcaacgaaaaagtcaaacttgtgaaagggacttgaattgtttttatgggaagtgttgcagc |
36537493 |
T |
|
| Q |
407 |
cataagtttcccaagtgggagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaatgcaagg |
506 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||| |
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|
| T |
36537494 |
cataagtttcccaagtgggagggtaataatctgagctgagacagaagtgattttcaaagggttggttttgtatcctaaaaattggttcataaatgcaagg |
36537593 |
T |
|
| Q |
507 |
agaatacatgatgctaaccctagaacccatgtccggaa |
544 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||| |
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|
| T |
36537594 |
agcacacatgatgctaaccctagaacccatgtccggaa |
36537631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 546
Target Start/End: Original strand, 36524649 - 36525188
Alignment:
| Q |
7 |
agctagctacaaagactacgaaaaagaattgcagcctggatggtcctcctcgaggccnnnnnnnnnnnncatgaaatgctctaaatagagaaacctgcac |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || | ||||||| ||||| |||||||||| ||||||||||| || ||||| |
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|
| T |
36524649 |
agctagctacaaagactacggaaaagaattgcagcctagaagttcctcctttaggccttttttctttttcatgaaatgccctaaatagagagacttgcac |
36524748 |
T |
|
| Q |
107 |
aaggctttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatctgagtcgatagcgccaacaaa |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
36524749 |
aaggttttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaataccagcccatccataccctagcatttgagtcgatagcgctaacaaa |
36524848 |
T |
|
| Q |
207 |
taagccgcgacgggatggatgcttctgtgatagaaagctttaacaattgtgattatgttgattgcataaacactactagatcccgagctagcaaagatgg |
306 |
Q |
| |
|
|||||||| || ||||| || | ||||||| ||||| ||||||||||||| ||| |||||||| ||||| ||||||| |||||||||||||||| |
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|
| T |
36524849 |
taagccgctactggatgtatatctttgtgataaaaagccttaacaattgtgactatcccaattgcatatacactgttagatcctgagctagcaaagatgg |
36524948 |
T |
|
| Q |
307 |
taatcaacacatgttctttcaaagagaatggccccgggttcaacgaaaaagaccatgttgtaaaaggtacttgaattggttttgtgggaagtgttgcagc |
406 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||| |||||| | || ||||| ||||| | |||||||||||||||||||||||||||||| |
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|
| T |
36524949 |
tgatcaacacatgttctttcaaagagaatggccccggattcaaagaaaaataacaggttgtgaaagggatttgaattggttttgtgggaagtgttgcagc |
36525048 |
T |
|
| Q |
407 |
cataagtttcccaagtgggagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaatgcaagg |
506 |
Q |
| |
|
|||||| | ||||||||||| | || |||||||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36525049 |
cataagccttccaagtgggagtgtgatgatctgagctgaaacagaagtgattctcaaagggttggttctgtagcctaagaactggttcacaaatgcaagg |
36525148 |
T |
|
| Q |
507 |
agaatacatgatgctaaccctagaacccatgtccggaatg |
546 |
Q |
| |
|
|| | |||||| ||||| ||||||| |||||||| ||||| |
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|
| T |
36525149 |
agcacacatgaagctaagcctagaatccatgtcctgaatg |
36525188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 231 - 507
Target Start/End: Complemental strand, 42056125 - 42055849
Alignment:
| Q |
231 |
ctgtgatagaaagctttaacaattgtgattatgttgattgcataaacactactagatcccgagctagcaaagatggtaatcaacacatgttctttcaaag |
330 |
Q |
| |
|
||||| |||||||| |||||||| ||||| ||||| || |||||||||| | || ||| | ||||||||||||||||| | ||||||| |||||| |
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|
| T |
42056125 |
ctgtggtagaaagccttaacaatagtgataatgttaatggcataaacaccgccagctccagcactagcaaagatggtaatgagggcatgttccttcaaat |
42056026 |
T |
|
| Q |
331 |
agaatggccccgggttcaacgaaaaagaccatgttgtaaaaggtacttgaattggttttgtgggaagtgttgcagccataagtttcccaagtgggagggc |
430 |
Q |
| |
|
|||||| || || ||||| | ||||||||| | || || || |||| | | | |||| ||||||||||||||||| ||||| |||| |||||| | |
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|
| T |
42056025 |
tgaatggtccaggattcaatgtgaaagaccatttagtgaagggaactttatatattgttgttggaagtgttgcagccattagttttccaattgggagaga |
42055926 |
T |
|
| Q |
431 |
aataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaactggttcacaaatgcaagga |
507 |
Q |
| |
|
|| |||||| || ||||||| |||||| ||| ||||||||||||||| || || || ||||||||||| ||||||| |
|
|
| T |
42055925 |
aacaatctgtgctgagacagcagtgatagtcagagggttggttctgtacccaaagaattggttcacaaaggcaagga |
42055849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 388 - 507
Target Start/End: Complemental strand, 42081118 - 42080999
Alignment:
| Q |
388 |
ttgtgggaagtgttgcagccataagtttcccaagtgggagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaa |
487 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||| |||||| | || |||||| || ||||||| |||||| ||| ||||||||||||||| || || || |
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|
| T |
42081118 |
ttgttggaagtgttgcagccattagttttccaattgggagagaaacaatctgtgctgagacagcagtgatagtcagagggttggttctgtacccaaagaa |
42081019 |
T |
|
| Q |
488 |
ctggttcacaaatgcaagga |
507 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
42081018 |
ttggttcacaaaggcaagga |
42080999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 506
Target Start/End: Complemental strand, 42072170 - 42072052
Alignment:
| Q |
388 |
ttgtgggaagtgttgcagccataagtttcccaagtgggagggcaataatctgagccgagacagaagtgattttcaaagggttggttctgtagcctaaaaa |
487 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||| |||||| ||||||||||| || ||||||||||| || || ||||||||||||| | || || || |
|
|
| T |
42072170 |
ttgttggaagtgttgcagccattagttttccaactgggagagcaataatctgtgctgagacagaagtaatagacagagggttggttctgaatccaaagaa |
42072071 |
T |
|
| Q |
488 |
ctggttcacaaatgcaagg |
506 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
42072070 |
ttggttcacaaaggcaagg |
42072052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 42072594 - 42072498
Alignment:
| Q |
90 |
aatagagaaacctgcacaaggctttcaggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatct |
186 |
Q |
| |
|
||||| || ||||| ||||| ||| ||||||||||||||| || || || |||||||||||||||||||| |||||||||||||| || ||||||| |
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|
| T |
42072594 |
aatagtgacacctggacaagatttttaggccaccacatgtagggagagtccacaaggaaccttctgaaaataccagcccatccataaccaagcatct |
42072498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 42056364 - 42056294
Alignment:
| Q |
116 |
aggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatct |
186 |
Q |
| |
|
||||||||||||||| || || || ||||||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
42056364 |
aggccaccacatgtagggagagtccacaaggaaccttctgaacataccagcccatccataaccaagcatct |
42056294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 42081502 - 42081432
Alignment:
| Q |
116 |
aggccaccacatgtaaggtgaatcaacaaggaaccttctgaaaatcccagcccatccataccctagcatct |
186 |
Q |
| |
|
|||||||||||| ||||| || || |||||||| ||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
42081502 |
aggccaccacatataaggagagtccacaaggaatcttctgaaaataccagcccatccataaccaagcatct |
42081432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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