View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4391_high_1 (Length: 551)
Name: NF4391_high_1
Description: NF4391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4391_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Original strand, 52953239 - 52953764
Alignment:
| Q |
18 |
taacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacattgcaaaagagcttaaactctttctcaaccctcataaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953239 |
taacccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacattgcaaaagagcttaaactctttctcaaccctcataaact |
52953338 |
T |
|
| Q |
118 |
tcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattcttgtgagaaatcttccgatttgttgtctcagtatatgaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52953339 |
tcctttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattcttgtgagaaatcttctgatttgttgtctcagtatatgaat |
52953438 |
T |
|
| Q |
218 |
tacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953439 |
tacaaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgatttcgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaat |
52953538 |
T |
|
| Q |
318 |
ctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953539 |
ctgtttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaa |
52953638 |
T |
|
| Q |
418 |
ttttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtctagaagt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52953639 |
ttttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatggatatgagaatcaaaggtttgttaagtctagaagt |
52953738 |
T |
|
| Q |
518 |
aagaatgattttcttgttgatgatgt |
543 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
52953739 |
aagaatgattttcttgttgatgatgt |
52953764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 21 - 543
Target Start/End: Complemental strand, 31904284 - 31903762
Alignment:
| Q |
21 |
cccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacattgcaaaagagcttaaactctttctcaaccctcataaacttcc |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
31904284 |
cccagatagaaaaacagcttcttggctatgaaagttttgatctttcaagacccaacattgcaaaagagctcaaactttttcttaaccctcataaacttcc |
31904185 |
T |
|
| Q |
121 |
tttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattcttgtgagaaatcttccgatttgttgtctcagtatatgaattac |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
31904184 |
tttgggtaaagattccaaaactggaatgactgagatggtttcatctatgggctattcttgtgagaaatcttctgatttgatgtcccagtatatgaattac |
31904085 |
T |
|
| Q |
221 |
aaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaatctg |
320 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31904084 |
aaagtatttggaaattgtcaagatgattggagttatgctcagaaattgattttgaaagggtgtgagcctttaccaagaagaaggtgttttgctaaatctg |
31903985 |
T |
|
| Q |
321 |
tttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31903984 |
tttcttctaaggtaaattatcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattt |
31903885 |
T |
|
| Q |
421 |
tgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtctagaagtaag |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31903884 |
tgagtgtttgaatggtaagaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagtaag |
31903785 |
T |
|
| Q |
521 |
aatgattttcttgttgatgatgt |
543 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31903784 |
aatgattttcttgttgatgatgt |
31903762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 339 - 543
Target Start/End: Original strand, 31673573 - 31673777
Alignment:
| Q |
339 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31673573 |
atcttcatccttttccaacttcactttggaaacctgttagcaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31673672 |
T |
|
| Q |
439 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgat |
538 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31673673 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgct |
31673772 |
T |
|
| Q |
539 |
gatgt |
543 |
Q |
| |
|
||||| |
|
|
| T |
31673773 |
gatgt |
31673777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 339 - 498
Target Start/End: Complemental strand, 31922101 - 31921942
Alignment:
| Q |
339 |
atcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31922101 |
atcttcatccttttccaacttcactttggaaacctgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaa |
31922002 |
T |
|
| Q |
439 |
gaaattgaatagaggttgcatgcattgctttgatttggttaatgggtatgagaatcaaag |
498 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31922001 |
gaaattgaataggggttgcatgcattgctttgatttggttaatggttatgagaatcaaag |
31921942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 21 - 543
Target Start/End: Original strand, 7760119 - 7760638
Alignment:
| Q |
21 |
cccagattgaaaaacagcttcttggttatgaaagttttgatctttcaagacccaacattgcaaaagagcttaaactctttctcaaccctcataaacttcc |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||| ||| | ||| ||||||| |
|
|
| T |
7760119 |
cccagatggaaaaacagcttcttggttatgaaagcattgatctttcaagacccaacattgcaaatgagctgaaaatcttcctccaaagacatcaacttcc |
7760218 |
T |
|
| Q |
121 |
tttgggtaaagattccaagactggaatgactgaaatggtttcatctgtgggtcattcttgtgagaaatcttccgatttgttgtctcagtatatgaattac |
220 |
Q |
| |
|
||| || || ||||| | ||||| || ||||||||||| ||||| || |||||||||||||||||| | | || |||||||| |||| |||| |||| |
|
|
| T |
7760219 |
tttaggcaaggattcaagaactgggatcactgaaatggtgtcatcagttggtcattcttgtgagaaaagtgcagacttgttgtcacagttcatgagttac |
7760318 |
T |
|
| Q |
221 |
aaagtgtttggaaattgtcaagatgattggagttttgcacagaaattgattttgaaaaggtgtgagcctttacctagaagaaggtgttttgctaaatctg |
320 |
Q |
| |
|
|| | | |||| ||||| |||||||||||| | || |||||| |||| || ||| |||||||||||||||||||||||||||||||| | ||| ||| |
|
|
| T |
7760319 |
aaggcttctggagcttgtcctgatgattggagtgtagctcagaaactgatcttaaaagggtgtgagcctttacctagaagaaggtgtttttcaaaaactg |
7760418 |
T |
|
| Q |
321 |
tttcttctaaggtaaattatcttcatccttttccaacttcactttggaagcctgttagtaacaaaactgttaattggagtggttttagttgtaagaattt |
420 |
Q |
| |
|
|||| || | | | | || ||||||||| ||| |||||||||||| || |||| || ||| |||||||||||||||| | |||||||| ||| |
|
|
| T |
7760419 |
tttc----aaaatcaggtttttt--tccttttcctgtttctctttggaagcctcttggtaataacacttttaattggagtggtttgaattgtaagagttt |
7760512 |
T |
|
| Q |
421 |
tgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgatttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagt |
517 |
Q |
| |
|
||| |||||||| || |||||||||| ||||| ||| | |||| ||||||||||||| ||| |||||||||| || ||||| ||||| | |||| |
|
|
| T |
7760513 |
tgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgatttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagt |
7760612 |
T |
|
| Q |
518 |
aagaatgattttcttgttgatgatgt |
543 |
Q |
| |
|
|| ||||||||| | ||||||||||| |
|
|
| T |
7760613 |
aaaaatgattttttggttgatgatgt |
7760638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 12052579 - 12052462
Alignment:
| Q |
152 |
gaaatggtttcatctgtgggtcattcttgtgagaaatcttccgatttgttgtctcagtatatgaattacaaagtgtttggaaattgtcaagatgattgga |
251 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||| || || |||||||| | ||||| | |||||| || ||||||| ||||| ||||||| |
|
|
| T |
12052579 |
gaaatggtttcatttgtgggtcattctagtgagaaatcttctgaattcttgtctcaacacatgaacttcaaagtaattcgaaattgccaagacgattgga |
12052480 |
T |
|
| Q |
252 |
gttttgcacagaaattga |
269 |
Q |
| |
|
| |||||| ||||||||| |
|
|
| T |
12052479 |
gatttgcatagaaattga |
12052462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 373 - 543
Target Start/End: Original strand, 28959879 - 28960052
Alignment:
| Q |
373 |
tgttagtaacaaaactgttaattggagtggttttagttgtaagaattttgagtgtttgaatggtaagaaattgaatagaggttgcatgcattgctttgat |
472 |
Q |
| |
|
|||| |||| || ||| |||||||||||||||| | |||||||| |||||| |||||||| || |||||||||| ||||| ||| | |||| |||||| |
|
|
| T |
28959879 |
tgttggtaataacacttttaattggagtggtttgaattgtaagagttttgaatgtttgaaaggaaagaaattgagtagagattgtgttaattgttttgat |
28959978 |
T |
|
| Q |
473 |
ttggtta---atgggtatgagaatcaaaggtttgttaagtctagaagtaagaatgattttcttgttgatgatgt |
543 |
Q |
| |
|
||||||| ||| |||||||||| || ||||| ||||| | |||||| ||||||||| | ||||||||||| |
|
|
| T |
28959979 |
ttggttagtggtggaaatgagaatcagagatttgtgaagtcaaaaagtaaaaatgattttttggttgatgatgt |
28960052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University