View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4391_low_3 (Length: 231)

Name: NF4391_low_3
Description: NF4391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4391_low_3
NF4391_low_3
[»] chr2 (3 HSPs)
chr2 (138-220)||(38940577-38940659)
chr2 (20-80)||(38940459-38940519)
chr2 (138-182)||(38940728-38940772)
[»] chr4 (9 HSPs)
chr4 (144-182)||(55759167-55759204)
chr4 (184-221)||(55757710-55757747)
chr4 (184-221)||(55757884-55757921)
chr4 (184-221)||(55758058-55758095)
chr4 (184-221)||(55758232-55758269)
chr4 (184-221)||(55758406-55758443)
chr4 (184-221)||(55758580-55758617)
chr4 (184-221)||(55758750-55758787)
chr4 (184-221)||(55759098-55759135)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 38940577 - 38940659
Alignment:
Q  138 cactcataaccttttgtttaagattgttgatatttagtacttgatatgattaatttttcaccatgatctttgagtataatcta 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38940577 cactcataaccttttgtttaagattgttgatatttagtacttgatatgattaatttttcaccatgatctttgagtataatcta 38940659  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 38940459 - 38940519
Alignment:
Q  20 tcttgtttattgagttttcaaagaatttgattttttaccaggttaattgattaataacaac 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38940459 tcttgtttattgagttttcaaagaatttgattttttaccaggttaattgattaataacaac 38940519  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 38940728 - 38940772
Alignment:
Q  138 cactcataaccttttgtttaagattgttgatatttagtacttgat 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  38940728 cactcataaccttttgtttaagattgttgatatctagtacttgat 38940772  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 55759204 - 55759167
Alignment:
Q  144 taaccttttgtttaagattgttgatatttagtacttgat 182  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  55759204 taaccttttgttta-gattgttgatatttagtacttgat 55759167  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55757747 - 55757710
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55757747 tgattgatttttcaccataatctttgagtataatctac 55757710  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55757921 - 55757884
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55757921 tgattgatttttcaccataatctttgagtataatctac 55757884  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55758095 - 55758058
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758095 tgattgatttttcaccataatctttgagtataatctac 55758058  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55758269 - 55758232
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758269 tgattgatttttcaccataatctttgagtataatctac 55758232  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55758443 - 55758406
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758443 tgattgatttttcaccataatctttgagtataatctac 55758406  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55758617 - 55758580
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758617 tgattgatttttcaccataatctttgagtataatctac 55758580  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55758787 - 55758750
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55758787 tgattgatttttcaccataatctttgagtataatctac 55758750  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 55759135 - 55759098
Alignment:
Q  184 tgattaatttttcaccatgatctttgagtataatctac 221  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  55759135 tgattgatttttcaccataatctttgagtataatctac 55759098  T

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