View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392-Insertion-1 (Length: 1200)
Name: NF4392-Insertion-1
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 486 - 1004
Target Start/End: Original strand, 41802863 - 41803382
Alignment:
| Q |
486 |
cttgcgttaaatcctaaaatttggagttttggactacattttggtttagtaactgtaatgatggtagatattgatcatgtatatcatcttttatatgtta |
585 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802863 |
cttgcgttaaatcctaaaatttggagttttggaccacattttggtttagtaactgtaatgatggtagatattgatcatgtatatcatcttttatatgtta |
41802962 |
T |
|
| Q |
586 |
tatacaacagaaacattatcgaccacattatttgtcatttttatttgtttaactataattcattatcgacctctataattcatttttactcaattgcaca |
685 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802963 |
tatacaacagaaacattatcgaccacattatttgtcatttttatttgtttaactataattcattatcgacctctataattcatttttactcaattgcaca |
41803062 |
T |
|
| Q |
686 |
aaagtagttaagggacattttcagaaatttcttgaaaacagattctatagaacaatttattttttgaaactgtgtgctcaaatatcaaataattgtttta |
785 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41803063 |
aaagtagttaagagacattttcagaaatttcttgaaaacagattctatagaacaattttttttttgaaactgtgtgctcaaatatcaaataattgtttta |
41803162 |
T |
|
| Q |
786 |
aaattttcagctcttcactttctggaatctctacccacacggtgaacaaattatctttgactaagaaattggatatcagtggagaagatggtgaaaattc |
885 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
41803163 |
aaattttcagctcttcactttctggaatctctacccacacggtgaacaaattatctttgactgagaaattggatatcagtggagaagatggtgaatattc |
41803262 |
T |
|
| Q |
886 |
acattgatcctgataaagaaaagcagctccagggaggtaaaaaaggtacaatctctacccacacaattaaactatgcaccatgacagcagaattgtgata |
985 |
Q |
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| T |
41803263 |
acattgatcctgataaagaaaagcagctccagggaggtaaaaaaggtacaatctctacccacacaattacactatgcaccatgacagcagaattgtgata |
41803362 |
T |
|
| Q |
986 |
taatggaaga-tgtgatgca |
1004 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
41803363 |
taatggaagattgtgatgca |
41803382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Original strand, 41802388 - 41802796
Alignment:
| Q |
8 |
ctctcttatagctgaagaagctcgactttgatttcagcttttggattcgatcagatcaaactgaaatcactcacgtaagcttcaatttcactatctcaat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802388 |
ctctcttatagctgaagaagctcgactttgatttcagcttttggattcaatcagatcaaactgaaatcactcacgtaagcttcaatttcactatctcaat |
41802487 |
T |
|
| Q |
108 |
ttcttgcattgaatttattgcgtcttttacaatttgaagctcactcttcttgtttcttgcattcaatttggaacctaacagattcagaagataagttgat |
207 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41802488 |
ttcttgcattaaatttattgcgtcttttacaatttgaagcccactcttcttgtttcttgcattcaatttggaacctaacagattcagaagataagctgat |
41802587 |
T |
|
| Q |
208 |
acaatatctaaggtacgtattccaattttcaatatctaagaatattgaaaatcgattttagggattatgtatgcgttctccattttttcttcttctttgg |
307 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
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| T |
41802588 |
acaatatctaaggtacgtattccaattttcaatatctaagaatattgaaaatcgattttagggattatgtacgcgttctccatttttt-ttc--ctttgg |
41802684 |
T |
|
| Q |
308 |
gtagtaatattattacataattattgcttctttttctttnnnnnnnnnctaaattcttgcaagattcctgaaattgttgtaaaaaattagatgttggtga |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41802685 |
gtagtaatattattacataattattgcttctttttctttaaaaaaaaattaaattcttgcaagattcctgaaattgttgtaaaaaattagatgttggtga |
41802784 |
T |
|
| Q |
408 |
tgcttattagta |
419 |
Q |
| |
|
|||||||||||| |
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|
| T |
41802785 |
tgcttattagta |
41802796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 184; E-Value: 5e-99
Query Start/End: Original strand, 763 - 1004
Target Start/End: Original strand, 41810128 - 41810364
Alignment:
| Q |
763 |
tcaaatatcaaataattgttttaaaattttcagctcttcactttctggaatctctacccacacggtgaacaaattatctttgactaagaaattggatatc |
862 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810128 |
tcaaatatcaaataattgtttttaaattttcagctcttcactttctggaatct------acacggtgaacaaattatctttgactaagaaattggatatc |
41810221 |
T |
|
| Q |
863 |
agtggagaagatggtgaaaattcacattgatcctgataaagaaaagcagctccagggaggtaaaaaaggtacaatctctacccacacaattaaactatgc |
962 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
41810222 |
agtggagaagatggtgaaaattgacattgatcctgataaagaaaagcagcttcagggagctaaaacaggtataatctctacccacacaattacactatgc |
41810321 |
T |
|
| Q |
963 |
accatgacagcagaattgtgatataatggaaga-tgtgatgca |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41810322 |
accatgacagcagaattgtgatataatggaagattgtgatgca |
41810364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 759 - 881
Target Start/End: Original strand, 41795391 - 41795517
Alignment:
| Q |
759 |
gtgctcaaatatcaaataattgttttaaaattttcagctcttcactttctggaatctctacccacacggtgaacaaattatctttga----------cta |
848 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||| ||| |||||||||||||||| ||| ||| |
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| T |
41795391 |
gtgctcaaatatcaaataattgtgttaaaattttcagcacttcacttccaggaatct------acatggtgaacaaattatctctgacttgatattgcta |
41795484 |
T |
|
| Q |
849 |
agaaattggatatcagtggagaagatggtgaaa |
881 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
41795485 |
agaaattggatatcagtggagaagatggtgaaa |
41795517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 884 - 973
Target Start/End: Original strand, 41795556 - 41795643
Alignment:
| Q |
884 |
tcacattgatcctgataaagaaaagcagctccagggaggtaaaaaaggtacaatctctacccacacaattaaactatgcaccatgacagc |
973 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||| | |||||||| ||| ||| |||||||||| |
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|
| T |
41795556 |
tcacattgaccctgataaagaagagcagctccagggagctaaaacaggtacaatctctatc--cacaattacactctgccccatgacagc |
41795643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 916 - 996
Target Start/End: Original strand, 41803544 - 41803624
Alignment:
| Q |
916 |
agggaggtaaaaaaggtacaatctctacccacacaattaaactatgcaccatgacagcagaattgtgatataatggaagat |
996 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||| | | |||||||||||| | |||||||||||| | ||||||| |
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|
| T |
41803544 |
agggagctaaaacaggtacaatctctacccacacaattacattttgcaccatgacaactgaattgtgatatgacggaagat |
41803624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 847 - 881
Target Start/End: Original strand, 37700672 - 37700706
Alignment:
| Q |
847 |
taagaaattggatatcagtggagaagatggtgaaa |
881 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37700672 |
taagaaattggatatcagtggagaagatggtgaaa |
37700706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 896 - 942
Target Start/End: Original strand, 41803987 - 41804033
Alignment:
| Q |
896 |
tgataaagaaaagcagctccagggaggtaaaaaaggtacaatctcta |
942 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
41803987 |
tgataaagaaaagcagctccagggagctaaagcaggtacaatctcta |
41804033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 41809866 - 41809937
Alignment:
| Q |
247 |
gaatattgaaaatcgattttagggattatgtatgcgttctccattttttcttcttctttgggtagtaatattattacata |
326 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
41809866 |
gaatattcaaaatcgattttaggg------tatgtgttctcc--tttttcttcttctttgggtagtagtattattacata |
41809937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 41792429 - 41792462
Alignment:
| Q |
33 |
ctttgatttcagcttttggattcgatcagatcaa |
66 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
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|
| T |
41792429 |
ctttggtttcagcttttggattcgatcagatcaa |
41792462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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