View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392-Insertion-2 (Length: 1117)
Name: NF4392-Insertion-2
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 502 - 1117
Target Start/End: Complemental strand, 50423450 - 50422826
Alignment:
| Q |
502 |
agattaccttcacctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcatgataatttcacaagatcacacaatcaaatac |
601 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50423450 |
agattaccttggcctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatac |
50423351 |
T |
|
| Q |
602 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcgttgcacgttgcaatacattgtttcttgtatttg |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50423350 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcattgcacgttgcaatacattgtttcttgtatttg |
50423251 |
T |
|
| Q |
702 |
tacattttaaatttttgcatatgttccttttagtgnnnnnnnnnn----cttttcaatctattactatattatatcgcctcctctaaaacaaccacagtt |
797 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50423250 |
tacattttaaatttttgcatatgttccttttagtgtttgttttttttttcttttcaatctattactatattatatcgcctcctctaaaacaaccacagtt |
50423151 |
T |
|
| Q |
798 |
ttagaaaccgacatattaatcagtccaattagaaccgatgatatttacagataaattgactggttggattgtctacactatggaaataatagttttacag |
897 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50423150 |
ttagaaaccgacatattaatcagtccaattagaaccaatgatatttacagataaatcgactggttggattgtctacactatggaaataatagttttacag |
50423051 |
T |
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| Q |
898 |
agtcgggtaaatcagttcaatttgtttcagttatacagttcgactgatgaccaacgattaaaccaatgatttgatacacggatacccttattgaa-taat |
996 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
50423050 |
agtcgggtaaatcagttcaatttgtttcagttatacagttcgactgatgatcaacgattaaaccaatgatttgatacacggatacccttatagaattaat |
50422951 |
T |
|
| Q |
997 |
caattggtcggtttttatatca-ctctactatttataggtatg-tttcccccacctca-catgg-cataaaaaaggcatgctcacggttttgggttcgaa |
1092 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||| |||||| ||||||| |
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| T |
50422950 |
caattggtcggtttttatatcacctctacta-ttataggtatgttttcccccaccttaccatggccataaaaaaggcatgctcac-gttttgtgttcgaa |
50422853 |
T |
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| Q |
1093 |
caaa--tttatgatctagcgaattttt |
1117 |
Q |
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|||| ||||||||||||||| ||||| |
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| T |
50422852 |
caaaattttatgatctagcgatttttt |
50422826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Complemental strand, 50423976 - 50423508
Alignment:
| Q |
8 |
atattccatcaatccaaacatagtctaatgtttttacgaattaccctacactcttaagtctaaacnnnnnnnnnn-aaacggcaaatattattgaaccaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50423976 |
atattccatcaatccaaacatagtctaatgtttttacgaattaccctacactcttaagtctaaacttttttttttgaaacggcaaatattattgaaccaa |
50423877 |
T |
|
| Q |
107 |
aactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacatcacccaacaaatataagaactaaaaccaggc |
206 |
Q |
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| T |
50423876 |
aactcacgcaagatgcgacgagccggagaaagaaggaaactacaaagatgccgccttttagcgtaacatcacccaacaaatataagaactaaaaccaggc |
50423777 |
T |
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| Q |
207 |
aagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttacaaacaacaggcc |
306 |
Q |
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| T |
50423776 |
aagcaccccaagaatctaagattgcgaaagctatgtctttgaaatctagcgatccacaccaaaattcaatcccatagccaagccttataaacaacaggcc |
50423677 |
T |
|
| Q |
307 |
agcaaccaacaaatcccctaaaacactgcaatacagcagaagctgctgctgaactgtcacaacc--agcagcacatcagcgctgtcagcagaataacagc |
404 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50423676 |
agcaaccaacaaatcccctaaaacattgcaatacagcagaagctgctgctgaactgtcacaaccatagcagcacatcagcgctgtcagcagaataacagc |
50423577 |
T |
|
| Q |
405 |
acggctgggacgagcctgaccaccaaacagcagcagattaaggcaccagaacttgacggggacaccaac |
473 |
Q |
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| T |
50423576 |
acggctgggacgagcctgaccaccaaacagcagcagattaacgcaccagaacttgacggggacaccaac |
50423508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 4636237 - 4636329
Alignment:
| Q |
83 |
aaacggcaaatattattgaaccaaaactcacgcaagatgcgacgagccggagaaagaaggaaactacaaggatgccgccttttagcgtaacat |
175 |
Q |
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||||||||||||||||| | ||||||||| ||||||| || | |||| | |||||||| |||||||||| ||| |||||| |||||||||||| |
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| T |
4636237 |
aaacggcaaatattattaatccaaaactctcgcaagacgcaaagagcagtagaaagaaagaaactacaaagataccgcctattagcgtaacat |
4636329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 353 - 416
Target Start/End: Original strand, 4636553 - 4636616
Alignment:
| Q |
353 |
tgctgaactgtcacaaccagcagcacatcagcgctgtcagcagaataacagcacggctgggacg |
416 |
Q |
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| T |
4636553 |
tgctgaactgtcaaaaacagcagcacatcagcgctgccagcagaagaccagcacagctgggacg |
4636616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Complemental strand, 14425825 - 14425772
Alignment:
| Q |
572 |
ataatttcacaagatcacacaatcaaatacacat--ttcacataacattcaata |
623 |
Q |
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||||||||||||||||||||||| ||||||| || ||||||||| |||||||| |
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| T |
14425825 |
ataatttcacaagatcacacaattaaatacatatacttcacataatattcaata |
14425772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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