View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4392-Insertion-3 (Length: 577)
Name: NF4392-Insertion-3
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 6 - 564
Target Start/End: Complemental strand, 51579358 - 51578801
Alignment:
| Q |
6 |
caagattttcatcaatcacgtcatatatatagatgtggataaaattggttatttgtttttagcatagattacatgaattcactaaatcttctgatatgct |
105 |
Q |
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| T |
51579358 |
caagattttcatcaatcacgtcatatatatag-tgtggataaaattggttatttgtttttagcatagattacataaattcactaaatcttctgatatgct |
51579260 |
T |
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| Q |
106 |
tgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcatcggatgcgtgaccagtaccgggcctactgta |
205 |
Q |
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| T |
51579259 |
tgaattttaccatttgacattttcttaatatgcagaaggtgtgcgtgctggattcaaggcagccggcatcggatgcgtgaccagtaccgggcctactgta |
51579160 |
T |
|
| Q |
206 |
cgtaattttttagatggacaaaacttagctgcattttcttaggtggtttttcatttgcttcttgactaaaaatacannnnnnnnnnnnnngctataacaa |
305 |
Q |
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| T |
51579159 |
cgtaattttttagatggacaaaacttagctgcattttcttaggtgttttttcatttgcttcttgactaaaaatacattttttttttttttgctttaacaa |
51579060 |
T |
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| Q |
306 |
acttcnnnnnnnttatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgnnnnnnnn |
405 |
Q |
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| T |
51579059 |
acttcaaaaaaattatggatttgagaaaattatgtatagtttagttaagaaccatatgaatgtccttagatccttaaaggatttatgttctgtttttttt |
51578960 |
T |
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| Q |
406 |
nctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattccatgg |
505 |
Q |
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| T |
51578959 |
tctaactacacttatgaaccttatctgttacatatgagctattttttaatgttgagctttacaaaattcacagttggttgcagttaggatgattccatgg |
51578860 |
T |
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| Q |
506 |
gcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctc |
564 |
Q |
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| T |
51578859 |
gcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctc |
51578801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 476 - 566
Target Start/End: Complemental strand, 302626 - 302536
Alignment:
| Q |
476 |
cagttggttgcagttaggatgattccatgggcaaaggcaaacctcaattatactgctcaggcgcttatcatatctgctggtgcgatctcga |
566 |
Q |
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| T |
302626 |
cagttggctgctgttcgcatggttccttgggcaaaggcaaacctcaattataccgctcaggcacttatcatatctgctggtatgatctcga |
302536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 303476 - 303433
Alignment:
| Q |
125 |
ttttcttaatatgcagaaggtgtgcgtgctggattcaaggcagc |
168 |
Q |
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| T |
303476 |
ttttcttgaaatgcagaaggtgtgcgtgctggattcaaggcagc |
303433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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