View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4392-Insertion-4 (Length: 348)

Name: NF4392-Insertion-4
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4392-Insertion-4
NF4392-Insertion-4
[»] chr1 (3 HSPs)
chr1 (181-342)||(47082804-47082965)
chr1 (8-56)||(47082637-47082685)
chr1 (117-155)||(47082740-47082778)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 181 - 342
Target Start/End: Original strand, 47082804 - 47082965
Alignment:
Q  181 ataaggaacgaatttgaattggaaatttggatacccttgagattaaaataaggaaattaatactatagtttatgtttgaattgggctgtacgatgtaaga 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082804 ataaggaacgaatttgaattggaaatttggatacccttgagattaaaataaggaaattaatactatagtttatgtttgaattgggctgtacgatgtaaga 47082903  T
Q  281 gttggtaggaatatgtgtcggggtttggttgtcttagcaatgagaagtcaaagctaggtagc 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082904 gttggtaggaatatgtgtcggggtttggttgtcttagcaatgagaagtcaaagctaggtagc 47082965  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 47082637 - 47082685
Alignment:
Q  8 ttactgtgttgtgtaatggagattagtatactcaaacgacagcgttgat 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082637 ttactgtgttgtgtaatggagattagtatactcaaacgacagcgttgat 47082685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 47082740 - 47082778
Alignment:
Q  117 aggacgaaaggaatctttttgtacatgatgatagtatag 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47082740 aggacgaaaggaatctttttgtacatgatgatagtatag 47082778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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