View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4392_low_1 (Length: 651)
Name: NF4392_low_1
Description: NF4392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4392_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 15460071 - 15460670
Alignment:
| Q |
18 |
ctattcataaggaatttctctgctttgttttaattttgttatcgattacaagttagtctttttgaaatgttcaaatattagaagtaagaaaatagcaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15460071 |
ctattcataaggaatttctctgctttgttttaattttcttatcgattacaagttagtcattttgaaattttcaaatattagaagtaagaaaatagcaata |
15460170 |
T |
|
| Q |
118 |
gatcattagagagattttgtaggtaagaagtatgaaaaaagattggaaactaatagccaatttcgatacactatctatcgattttcatttannnnnnnat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15460171 |
gatcattagagagattttgtaggtaagaagtatgaaaaaagattggaaacgaatagccaatttcgatacactatctatcgattttcatttatttttttat |
15460270 |
T |
|
| Q |
218 |
a-tttgatatgaaagagacaaaaatataaaagaaagatgtttacattcnnnnnnnnnnnnnnnacattcttttattatcgagatatgctagactagtttg |
316 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15460271 |
attttgatatgaaagagacaaaaatataaaagaatgatgtttatattc--tttttttttgtttacattcttttattatcgagatatgctagactagtttg |
15460368 |
T |
|
| Q |
317 |
ttgagagagaaataatttgttagtagagatataatattggatttgatatattgtaaatgcaggtcagttgatagttttttggacattaaaatacaaaggt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15460369 |
ttgagagagaaataatttgttagtagagatataatattggacttgatatattgtaaatgcaggttagttgatagttttttggacattaaaatacaaaggt |
15460468 |
T |
|
| Q |
417 |
catggtttaaattcagtattttctac-------ttctccatacttataatgtgtaagcctggcaactaggctaacattatctaattgcttaaaaggctca |
509 |
Q |
| |
|
||||||||||| | |||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||| ||| |
|
|
| T |
15460469 |
catggtttaaacttagtattttctacttctccattctccatacttataatgtgtaagtctggtaactagactaacat--------------------tca |
15460548 |
T |
|
| Q |
510 |
aatctctacccacttagactaattcaatgttgttttttaagaagttatttccaagtttaatagatatgctttgccaatgtaaattaattttacaataaca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15460549 |
aatctctacccacttagactaattcaatgttgttttttaagaagttatttccaagtttaatagatatgctttgccaatgtaaattaattttacaataaca |
15460648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 25 - 628
Target Start/End: Original strand, 15450735 - 15451312
Alignment:
| Q |
25 |
taaggaatttctctgctttgttttaattttgttatcgattacaagttagtctttttgaaatgttcaaatattagaagtaagaaaatagcaatagatcatt |
124 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
15450735 |
taaggaatttctatgctttgttttaattttgttatcgattacaagttagccatttcgaaatgttcaaatattagaagtaagaaaataggaatag---att |
15450831 |
T |
|
| Q |
125 |
agagagattttgtaggtaagaagtatgaaaaaagattggaaactaatagccaatttcgatacactatctatcgattttcatttannnnnnnatatttgat |
224 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| |||||| || ||| ||| |||||| || |||||||||||| | ||||| |
|
|
| T |
15450832 |
agagagattttacaggtaagaagtaagaaaaaagattggaaacaaatagctaacttcaatagactatccattgattttcatttat-------tttttgaa |
15450924 |
T |
|
| Q |
225 |
atgaaagagacaaaaatataaaagaaagatgtttacattcnnnnnnnnnnnnnnnacattcttttattatcgagatatgctagactagtttgttgagaga |
324 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15450925 |
ataaaagagacaaaaatataaaagaaagatgtttaca---------------------ttcttttattatcgagacctgctagactagtttgttgagaga |
15451003 |
T |
|
| Q |
325 |
gaaataatttgttagtagagatataatattggatttgatatattgtaaatgcaggtcagttgatag-ttttttggacattaaaatacaaaggtcatggtt |
423 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| | | ||||||||| | ||||||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
15451004 |
gaaataatttgttagtagagatagaatattggtaccgatgtcctataaatgcagctaagttgatagtttttttggacattgaaatacaaaggtcgtggtt |
15451103 |
T |
|
| Q |
424 |
taaattcagtattttctacttctccatacttataatgtgtaagcctggcaactaggctaacattatctaattgcttaaaaggctcaaatctctacccact |
523 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||| |||| || |||| ||| ||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
15451104 |
taaactctgtattttctacttctccatacttataatgtataagtctagcaattagactaacattatctaattgtttaaaaggctcaagtctcttaccact |
15451203 |
T |
|
| Q |
524 |
taga----ctaattcaatgttgttttttaagaagttatttccaagtttaatagatatgctttgccaatgtaaattaattttacaataacatccaattcag |
619 |
Q |
| |
|
|| | | | || | |||||| |||| ||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||| || |
|
|
| T |
15451204 |
tataaacgttggtatgatataattttttcagaaattatttccatatttaatggatatgctttgtcaatctaaattaattttacaataacatccaatttag |
15451303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 15618572 - 15618651
Alignment:
| Q |
22 |
tcataaggaatttctctgctttgttttaattttg-ttatcgattacaag-ttagtctttttgaaatgttcaaatattaga |
99 |
Q |
| |
|
||||||||||||||||||| || |||||||| || |||||||||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
15618572 |
tcataaggaatttctctgccttattttaattatgtttatcgattacaagtttagccattttgaaatgttcaaatgttaga |
15618651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 15638416 - 15638495
Alignment:
| Q |
22 |
tcataaggaatttctctgctttgttttaattttg-ttatcgattacaag-ttagtctttttgaaatgttcaaatattaga |
99 |
Q |
| |
|
||||||||||||||||||| || |||||||| || |||||||||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
15638416 |
tcataaggaatttctctgccttattttaattatgtttatcgattacaagtttagccattttgaaatgttcaaatgttaga |
15638495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 18476718 - 18476646
Alignment:
| Q |
21 |
ttcataaggaatttctctgctttgttttaattttgttatcgattacaagttagtctttttgaaatgttcaaat |
93 |
Q |
| |
|
|||||||||||||||||| | |||||||| || ||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
18476718 |
ttcataaggaatttctctcccatgttttaacttgtttatcgactacacgttagtcattttgaaatgttcaaat |
18476646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 15589851 - 15589892
Alignment:
| Q |
151 |
gaaaaaagattggaaactaatagccaatttcgatacactatc |
192 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
15589851 |
gaaaaaagaatggaaacaaatagccaatttcgatacagtatc |
15589892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 18471335 - 18471302
Alignment:
| Q |
152 |
aaaaaagattggaaactaatagccaatttcgata |
185 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
18471335 |
aaaaaagattggaaaccaatagccaatttcgata |
18471302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 18471469 - 18471397
Alignment:
| Q |
21 |
ttcataaggaatttctctgctttgttttaattttgtt-atcgattacaagttagtctttttgaaatgttcaaat |
93 |
Q |
| |
|
||||||||||| |||||| | | ||||||||||| || |||||||||| |||| || ||||||||||||||||| |
|
|
| T |
18471469 |
ttcataaggaaattctctacct-gttttaattttctttatcgattacacgttactcattttgaaatgttcaaat |
18471397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 15487559 - 15487595
Alignment:
| Q |
305 |
tagactagtttgttgagagagaaataatttgttagta |
341 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
15487559 |
tagactattttgttgagggagaaataatttgttagta |
15487595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University